FastQCFastQC Report
Wed 14 Aug 2019
000000000-C6PWG_l01_n02_ALm203RM.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-C6PWG_l01_n02_ALm203RM.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences812583
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AACGATT1100.00287664821.590912
CGGGAGA4358.0035534E-1116.379314
GATCGGG2355.1314033E-516.1702121
ATCGGGA2508.705785E-515.2000012
AGGGGCG4850.015.18041310-11
GCCTAAT1900.003752660215.01
GATTGGG3303.9450715E-614.3939391
CTCGAGC2000.00527623614.256
CCGGGAT2359.39259E-414.1489361
TGCATCG2400.001101270713.8541677
AGAGGGG10000.013.7750028
TAGGGGG3157.2759576E-1213.57142936-37
GCTAGTG2100.00728956913.5714285
TCGGAAA2150.0085165413.2558152
GAGGGGC10350.012.3913049
AGGGGGG7750.012.25806438-39
GAGAGGG9500.012.0000017
CGCCCTT2800.00350897511.8751
ATTGGGA4103.684411E-511.5853652
GGGAGAG11350.010.8810585
Produced by FastQC (version 0.11.5)