FastQCFastQC Report
Wed 14 Aug 2019
000000000-C6PWG_l01_n02_ALm202RM.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-C6PWG_l01_n02_ALm202RM.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences812609
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGTAT856.4055505E-427.9411771
AGAGCGG2509.478754E-920.98
ATCGGGT1350.00939809917.5925926
GATCGGG1952.2742811E-417.0512811
AACGGGA2304.2684413E-516.521742
CGGGTAG1754.4363333E-714.92857114-15
CTCGAAC2701.6759378E-414.0740741
GAACGGG2400.001101270713.8541671
GAGAGCG3507.2523526E-613.5714277
ATCGGGA2550.00173945713.0392162
CGGGAGA5502.737579E-912.9545464
AGAGGGG8500.012.85294158
CGGGGAT2600.002012995812.7884621
CTATTCA2650.002322669612.5471694
GCGGGTA2307.0546594E-712.39130414-15
AGGGGCG4200.011.87510-11
ACGGGAG2850.004005356711.6666673
TAGAGAC3802.3425004E-411.2500017
GGCCCTA3253.2654498E-810.96153932-33
GGAATCT4458.483376E-510.6741573
Produced by FastQC (version 0.11.5)