FastQCFastQC Report
Wed 14 Aug 2019
000000000-C6PWG_l01_n02_ALm201RM.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-C6PWG_l01_n02_ALm201RM.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences893136
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGG2651.8189894E-1225.0943411
ATCGGGA3102.582965E-1019.9193552
TGCGATC1800.002617997615.8333332
GGGTATA2801.8189894E-1215.26785834-35
TCGGGAG4702.6011548E-1015.15957453
GATTGGG3002.5658486E-514.2499991
CGAGAAT2359.393874E-414.1489361
CGGGTTA1050.007294064413.57142860-61
GCGGACT2100.00729031113.5714281
CGACTAA1050.007294064413.57142828-29
AGAGCGG3851.2993023E-613.5714288
CGGGGTT3154.0618754E-513.5714271
AGGGGCG4750.013.510-11
GAGAGCG4203.4498225E-612.4404767
CCGGGAT2700.002672717412.31481551
GCGGGTA1555.394883E-412.25806414-15
CGGGAGA6351.8062565E-911.9685044
GGGAATC3701.8289761E-411.5540542
GGGGAAT5001.9263643E-611.41
AATTGAC3350.001033534411.3432835
Produced by FastQC (version 0.11.5)