FastQCFastQC Report
Tue 6 Aug 2019
000000000-C5HTY_l01_n02_FSddRAD8.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-C5HTY_l01_n02_FSddRAD8.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1008
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGTAAAGGCGCTCGTCTTTGGTATGTAGGTGGTCAACAATTTTAATTG30.2976190476190476No Hit
ATGCTTTGCGTGACTATTTTCGTGATATTGGTCGTATGGTTCTTGCTGCC30.2976190476190476No Hit
TCTCGCCATAATTCAAACTTTTTTTCTGATAAGCTGGTTCTCACTTCTGT30.2976190476190476No Hit
GCTTCCTCCTGAGACTGAGCTTTCTCGCCAAATGACGACTTCTACCACAT30.2976190476190476No Hit
CGCAGCCGTTGCGAGGTACTAAAGGCAAGCGTAAAGGCGCTCGTCTTTGG20.1984126984126984No Hit
AACCACTAATAGGTAAGAAATCATGAGTCAAGTTACTGAACAATCCGTAC20.1984126984126984No Hit
CATAGAAACCAACAGCCATATAACTGGTAGCTTTAAGCGGCTCACCTTTA20.1984126984126984No Hit
ATTAAATTTAACCTGACTATTCCACTGCAACAACTGAACGGACTGGAAAC20.1984126984126984No Hit
CTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTC20.1984126984126984No Hit
GCCGAGCGTATGCCGCATGACCTTTCCCATCTTGGCTTCCTTGCTGGTCA20.1984126984126984No Hit
TTTTGACACTCTCACGTTGGCTGACGACCGATTAGAGGCGTTTTATGATA20.1984126984126984No Hit
GAAGACGGTTACGCAGTTTTGCCGCAAGCTGGCTGCTGAACGCCCTCTTA20.1984126984126984No Hit
TGCTACCGATAACAATACTGTAGGCATGGGTGATGCTGGTATTAAATCTG20.1984126984126984No Hit
TTTATGATAATCCCAATGCTTTGCGTGACTATTTTCGTGATATTGGTCGT20.1984126984126984No Hit
ATGCTGGTAATGGTGGTTTTCTTCATTGCATTCAGATGGATACATCTGTC20.1984126984126984No Hit
GCTTCTGGTGTGGTTGATATTTTTCATGGTATTGATAAAGCTGTTGCCGA20.1984126984126984No Hit
ACCCTCCCGACTGCCTATGATGTTTATCCTTTGGATGGTCGCCATGATGG20.1984126984126984No Hit
GCGTTCTTGCAAATCACCAGAAGGCGGTTCCTGAATGAATGGGAAGCCTT20.1984126984126984No Hit
TTCTGATAAGCTGGTTCTCACTTCTGTTACTCCAGCTTCTTCGGCACCTG20.1984126984126984No Hit
AATTTGCATACTGACCAAGAACGTGATTACTTCATGCAGCGTTACCATGA20.1984126984126984No Hit
TTGCGTTCTGCTTCAATATCTGGTTGAACGGCGTCGCGTCGTAACCCAGC20.1984126984126984No Hit
TTCTGTGCCGCGTTTCTTTGTTCCTGAGCATGGCACTATGTTTACTCTTG20.1984126984126984No Hit
TTTCGTGATATTGGTCGTATGGTTCTTGCTGCCGAGGGTCGCAAGGCTAA20.1984126984126984No Hit
CGCTTTGAGTCTTCTTCGGTTCCGACTACCCTCCCGACTGCCTATGATGT20.1984126984126984No Hit
CGTTCTGGCGCTCGCCCTGGTCGTCCGCAGCCGTTGCGAGGTACTAAAGG20.1984126984126984No Hit
CGACGACCAAAATTAGGGTCAACGCTACCTGTAGGAAGTGTCCGCATAAA20.1984126984126984No Hit
TGTCGCATTGCATTCATCAAACGCTGAATAGCAAAGCCTCTACGCGATTT20.1984126984126984No Hit
TTTCGACTCATCAGAAATATCCGAAAGTGTTAACTTCTGCGTCATGGAAG20.1984126984126984No Hit
TTCTGTTGGTGCTGATATTGCTTTTGATGCCGACCCTAAATTTTTTGCCT20.1984126984126984No Hit
TATCGAGGCTCTTAAACCTGCTATTGAGGCTTGTGGCATTTCTACTCTTT20.1984126984126984No Hit
TAACAACTATTTTAAAGCGCCGTGGATGCCTGACCGTACCGAGGCTAACC20.1984126984126984No Hit
TGACGGTTAATGCTGGTAATGGTGGTTTTCTTCATTGCATTCAGATGGAT20.1984126984126984No Hit
AGGAGTGATGTAATGTCTAAAGGTAAAAAACGTTCTGGCGCTCGCCCTGG20.1984126984126984No Hit
ATGAGGGACATAAAAAGTAAAAATGTCTACAGTAGAGTCAATAGCAAGGC20.1984126984126984No Hit
TAATAGAGGCCAAAGCGGTCTGGAAACGTACGGATTGTTCAGTAACTTGA20.1984126984126984No Hit
GCTCGTTATGGTTTCCGTTGCTGCCATCTCAAAAACATTTGGACTGCTCC20.1984126984126984No Hit
AACGTGCGTCAAAAATTACGTGCAGAAGGAGTGATGTAATGTCTAAAGGT20.1984126984126984No Hit
TTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGGTCGTGTTCAA20.1984126984126984No Hit
ACTGATGCTGCTTCTGGTGTGGTTGATATTTTTCATGGTATTGATAAAGC20.1984126984126984No Hit
ATTTTTATCGAAGCGCGCATAAATTTGAGCAGATTTGTCGTCACAGGTTG20.1984126984126984No Hit
TTTGACGGTTAATGCTGGTAATGGTGGTTTTCTTCATTGCATTCAGATGG20.1984126984126984No Hit
GGCTATGATGTTGATGGAACTGACCAAACGTCGTTAGGCCAGTTTTCTGG20.1984126984126984No Hit
GCATAAATTTGAGCAGATTTGTCGTCACAGGTTGCGCCGCCAAAACGTCG20.1984126984126984No Hit
ATTAAGGATGAGTGTTCAAGATTGCTGGAGGCCTCCACTATGAAATCGCG20.1984126984126984No Hit
GTTCAAGATTGCTGGAGGCCTCCACTATGAAATCGCGTAGAGGCTTTGCT20.1984126984126984No Hit
ACTAAAGAGATTCAGTACCTTAACGCTAAAGGTGCTTTGACTTATACCGA20.1984126984126984No Hit
TTCAACCAGATATTGAAGCAGAACGCAAAAAGAGAGATGAGATTGAGGCT20.1984126984126984No Hit
CGTAAATTCAGCGCCTTCCATGATGAGACAGGCCGTTTGAATGTTGACGG20.1984126984126984No Hit
TGAAATGGTAATAAGACGACCAATCTGACCAGCAAGGAAGCCAAGATGGG20.1984126984126984No Hit
CTATTTAACTGGCGGCGATTGCGTACCCGACGACCAAAATTAGGGTCAAC20.1984126984126984No Hit
ATTAGAAATATCCTTTGCAGTAGCGCCAATATGAGAAGAGCCATACCGCT20.1984126984126984No Hit
GTTAGGCCAGTTTTCTGGTCGTGTTCAACAGACCTATAAACATTCTGTGC20.1984126984126984No Hit
TTTGTTTCAGGGTTATTTGAATATCTATAACAACTATTTTAAAGCGCCGT20.1984126984126984No Hit
TGTCACGCTGATTATTTTGACTTTGAGCGTATCGAGGCTCTTAAACCTGC20.1984126984126984No Hit
TATTGACATTATGGGTCTGCAAGCTGCTTATGCTAATTTGCATACTGACC20.1984126984126984No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)