FastQCFastQC Report
Tue 6 Aug 2019
000000000-C5HTY_l01_n01_FSddRAD3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-C5HTY_l01_n01_FSddRAD3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATTAGCGGCGTTGACAGATGTATCCATCTGAATGCAATGAAGAAAACCA19.090909090909092No Hit
TAGACCACCGCCCCGAAGGGGACGAAAAATGGTTTTTAGAGAACGAGAAG19.090909090909092No Hit
GTAACAGAAGTGAGAACCAGCTTATCAGAAAAAAAGTTTGAATTATGGCG19.090909090909092No Hit
TAAGGCCACGTATTTTGCAAGCTATTTAACTGGCGGCGATTGCGTACCCG19.090909090909092No Hit
AGAAGTTAATGGATGAATTGGCACAATGCTACAATGTGCTCCCCCAACTT19.090909090909092No Hit
TTCCGTAAATTCAGCGCCTTCCATGATGAGACAGGCCGTTTGAATGTTGA19.090909090909092No Hit
ATCCACTGTTCACCATAAACGTGACGATGAGGGACATAAAAAGTAAAAAT19.090909090909092No Hit
TGGCGAGAAAGCTCAGTCTCAGGAGGAAGCGGAGCAGTCCAAATGTTTTT19.090909090909092No Hit
TCTGCTCAAATTTATGCGCGCTTCGATAAAAATGATTGGCGTATCCAACC19.090909090909092No Hit
AACCTGATTAGCGGCGTTGACAGATGTATCCATCTGAATGCAATGAAGAA19.090909090909092No Hit
TGATAGTTTGACGGTTAATGCTGGTAATGGTGGTTTTCTTCATTGCATTC19.090909090909092No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)