Basic Statistics
Measure | Value |
---|---|
Filename | 000000000-BTF83_l01_n02_Exp2_SrcID29_Shed_Ind2_D1_rep2_SID60.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 100677 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATAGGAAGCTCAAGAGGGAGATAACATTCCATGGGGCCAAAGAAATCT | 153 | 0.15197115527876276 | No Hit |
AAACAAGGGTGTTTTTTATTATTAAATAAGCTGAAACGAGAAAGTTCTTA | 149 | 0.14799805317997158 | No Hit |
GAGCAAAAGCAGGGTGACAAAGACATAATGGATCCAAACACTGTGTCAAG | 132 | 0.13111236926010905 | No Hit |
GTATACATCATGGTCATAAGTCCCATTTCTGATTGACTCTATGCAAGCGT | 112 | 0.11124685876615313 | No Hit |
CTCCAGCTCTATGCTGACAAAATGACCATCGTCAGCATCCACAGCACTCT | 110 | 0.10926030771675754 | No Hit |
ATATTAGAGTCTCCAGCCGGTCAAAAATCACACTGAAGTTCGCTTTCAGT | 110 | 0.10926030771675754 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTGTTT | 10 | 0.007081458 | 145.0 | 8 |
GATAGTA | 25 | 9.362063E-4 | 87.0 | 7 |
TAGTATA | 25 | 9.362063E-4 | 87.0 | 9 |
TCGTACT | 50 | 2.2911827E-6 | 72.5 | 2 |
CCAGATA | 35 | 0.0035571936 | 62.142857 | 4 |
ACAAGGT | 35 | 0.0035571936 | 62.142857 | 3 |
TAAACTA | 40 | 0.006035149 | 54.375 | 5 |
TATGCTA | 40 | 0.006035149 | 54.375 | 2 |
CACTGCT | 40 | 0.006035149 | 54.375 | 1 |
CAAGGGT | 120 | 5.820766E-11 | 54.375 | 4 |
GCTAGAG | 40 | 0.006035149 | 54.375 | 5 |
AGCAGGG | 80 | 5.8205296E-7 | 54.375 | 8 |
AAGGGTG | 95 | 3.101559E-8 | 53.421055 | 5 |
CTAGAGT | 55 | 3.205089E-4 | 52.727276 | 6 |
GATATGT | 55 | 3.205089E-4 | 52.727276 | 2 |
AGGGTGT | 100 | 4.6467903E-8 | 50.75 | 6 |
GTCTAGT | 60 | 4.9237715E-4 | 48.333332 | 1 |
ATATACT | 45 | 0.00961416 | 48.333332 | 4 |
AAGCAGG | 180 | 0.0 | 48.333332 | 7 |
GTCGTAC | 90 | 1.3116423E-6 | 48.333332 | 1 |