Basic Statistics
Measure | Value |
---|---|
Filename | 000000000-BTF83_l01_n02_Exp1_SrcID4_Shed_Ind3_D1_rep1_SID4.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 83440 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAGCAAAAGCAGGGTGACAAAGACATAATGGATCCAAACACTGTGTCAAG | 189 | 0.22651006711409397 | No Hit |
GAGCAAAAGCAGGTAGATATTGAAAGATGAGTCTTCTAACCGAGGTCGAA | 153 | 0.18336529242569513 | No Hit |
GAGCAAAAGCAGGGGATAATTCTATTAATCATGAAGACCATCATTGCTTT | 121 | 0.1450143815915628 | No Hit |
GTATAGGAAGCTCAAGAGGGAGATAACATTCCATGGGGCCAAAGAAATCT | 114 | 0.13662511984659634 | No Hit |
GTATACATCATGGTCATAAGTCCCATTTCTGATTGACTCTATGCAAGCGT | 110 | 0.1318312559923298 | No Hit |
GTTGTATATGAGGCCCATACAACTGGCAAGTGCACCAGCAGAATAACTGA | 93 | 0.11145733461169703 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTCCGAT | 10 | 0.0070792963 | 145.0 | 145 |
AAGGGTG | 100 | 0.0 | 72.5 | 5 |
AGGGTGT | 110 | 0.0 | 65.90909 | 6 |
GAGCAAA | 235 | 0.0 | 64.78723 | 1 |
GAGCGAA | 45 | 1.1874768E-4 | 64.44445 | 1 |
AGAGTCT | 70 | 2.3084613E-7 | 62.142857 | 6 |
CAAGGGT | 120 | 0.0 | 60.416668 | 4 |
CAAAAGC | 280 | 0.0 | 59.55357 | 4 |
GCAAAAG | 280 | 0.0 | 59.55357 | 3 |
AAGCAGG | 320 | 0.0 | 56.640625 | 7 |
TATATAG | 65 | 1.08492895E-5 | 55.76923 | 5 |
CTAGTAG | 65 | 1.08492895E-5 | 55.76923 | 3 |
GCAGGAG | 40 | 0.006031534 | 54.375 | 9 |
ATAGTGT | 40 | 0.006031534 | 54.375 | 9 |
TAGGAAG | 80 | 5.8083606E-7 | 54.375 | 4 |
AGCAGGC | 40 | 0.006031534 | 54.375 | 8 |
GGTGTTT | 135 | 3.6379788E-12 | 53.703705 | 8 |
GGGTGTT | 140 | 5.456968E-12 | 51.785713 | 7 |
AGCAGGG | 140 | 5.456968E-12 | 51.785713 | 8 |
ACAAGGG | 140 | 5.456968E-12 | 51.785713 | 3 |