FastQCFastQC Report
Fri 19 Oct 2018
000000000-BNG4D_l01_n02_undetermined.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-BNG4D_l01_n02_undetermined.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1048691
Sequences flagged as poor quality0
Sequence length76
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGGGCG1550.00737385213.54838770
GTAGGGA4602.7064382E-48.36956570
TGTAGGG5159.0896833E-47.47572869
GTGTAGG6108.841108E-57.45901668
TCGTGTA6157.8700494E-46.82926866
AAGATCG6250.00696194366.1670
CGGAAGA14704.2754618E-75.4761968
AGCGTCG8350.00395888235.44910266
TCGGAAG15351.0120675E-65.244368
ATCGGAA17052.8409522E-75.131964770
GATCGGA18001.6946251E-75.055555369
Produced by FastQC (version 0.11.5)