FastQCFastQC Report
Wed 14 Nov 2018
000000000-BMH75_l01_n02_undetermined.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-BMH75_l01_n02_undetermined.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2269883
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACAACGA207.03474E-445.00000430
GATAACT207.03474E-445.00000426
GAAGATC207.03474E-445.00000424
GCGGTGA207.03474E-445.00000430
CCGGATC351.2126293E-745.00000424
GGCCGAG207.03474E-445.00000410
TAAGTGC207.03474E-445.00000425
ACTTATG207.03474E-445.00000430
ACGATAT207.03474E-445.00000412
AGTGATC207.03474E-445.00000424
GTTCGCC207.03474E-445.00000434
CATAGGG351.2126293E-745.00000424
CTCGGGT207.03474E-445.00000417
CTCGGGG207.03474E-445.00000417
GAGCGAA207.03474E-445.00000434
CACAGAT207.03474E-445.00000423
TCGTATA207.03474E-445.00000418
CCCCAGG207.03474E-445.00000423
CGGCTTA406.8193913E-945.00000425
CGTCGAT207.03474E-445.00000423