FastQCFastQC Report
Wed 14 Nov 2018
000000000-BMH75_l01_n02_GAP1_CNV_id_barcode_d702.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-BMH75_l01_n02_GAP1_CNV_id_barcode_d702.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9333121
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAGAGGT253.8929487E-545.019
GAACCGC8838300.044.9697071
AACCGCT8871650.044.902362
ACCGCTC8884700.044.8371623
CCGCTCT8902700.044.7765854
CTCTTCC8915450.044.693377
CTTCCGA8902250.044.631759
TTCCGAT8914700.044.57673610
GATCTAT509050.044.55814
CGATCTA2011550.044.55146413
CGATCTC2499100.044.52823313
TCTTCCG8940400.044.4954078
GATCTTT432450.044.4797114
CGATCTT2066400.044.4468613
GATCTCT480750.044.41965514
GATCTCG659950.044.40677614
GATCTAG424700.044.40134414
GATCTTG559150.044.39640414
GATCTAC660850.044.37693814
GATCTTA510150.044.369314
Produced by FastQC (version 0.11.5)