FastQCFastQC Report
Wed 14 Nov 2018
000000000-BMH75_l01_n02_GAP1_CNV_id_barcode_d701.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-BMH75_l01_n02_GAP1_CNV_id_barcode_d701.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10206525
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GAACCGC9252100.044.9574431
AACCGCT9281050.044.9267852
ACCGCTC9286700.044.907693
CCGCTCT9301650.044.8580064
TTCCGAT9294000.044.80656410
CTTCCGA9293900.044.803669
CTCTTCC9325100.044.779957
CGATCTA2126500.044.75452413
CGATCTC2734500.044.71201713
TCCGATC9318500.044.6933511
GATCTAA466100.044.681414
GATCTTA561600.044.67548414
CGATCTT2241700.044.67379413
GATCTTT507750.044.6632214
GATCTAC664750.044.6581414
TCTTCCG9333250.044.6518948
GATCTAT567750.044.64729314
GATCTCG681700.044.63033714
GATCTCT585450.044.6272114
GATCTGG470750.044.5985114
Produced by FastQC (version 0.11.5)