FastQCFastQC Report
Wed 14 Nov 2018
000000000-BMH75_l01_n01_undetermined.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-BMH75_l01_n01_undetermined.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2269883
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCCCGG201.7441982E-595.000016
CTAGAAT201.7441982E-595.000016
AACCGGG800.095.000017
AGCCGGG409.094947E-1295.000017
TCACCGG254.6221248E-795.000016
GGGCTTG201.7441982E-595.000017
CAGCCGG201.7441982E-595.000016
AACCCGG254.6221248E-795.000016
CGCATGC201.7441982E-595.000016
ATATGCG450.095.000017
TCTAGTG254.6221248E-795.000016
TTATCCG201.7441982E-595.000015
ATCCGGG800.095.000017
GGGAATC500.095.000017
ATCCCGG254.6221248E-795.000016
CCGAGTG201.7441982E-595.000016
CCATAGG2500.095.000018
GTCCGGG409.094947E-1295.000017
CTCTGGA254.6221248E-795.000016
ACCCGGG1000.095.000017
Produced by FastQC (version 0.11.5)