FastQCFastQC Report
Wed 14 Nov 2018
000000000-BMH75_l01_n01_GAP1_CNV_id_barcode_d702.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-BMH75_l01_n01_GAP1_CNV_id_barcode_d702.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9333121
Sequences flagged as poor quality0
Sequence length101
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CATAGGT706600.093.9580469
TGGAAGT755700.093.724049
GCATAGG128850.093.709748
AGTGATT984300.093.663269
CGCATAT673000.093.6599
CTGGAAG246200.093.630178
ACATAGG166300.093.6004268
ATGCGAT584750.093.578459
CGCTTGA282150.093.5353558
CCGGGCT834500.093.474549
CCATAGG208500.093.473628
TAGTGAT261050.093.4351658
CAGTGAT339900.093.3929148
GAATCGT825900.093.332129
TCCGGGC250800.093.1818168
CTACTCT640400.093.086359
CCCGGGC248050.093.085068
GTGGAAG120050.093.021668
ACCGGGC196100.093.013778
TATGCGA164000.092.972568
Produced by FastQC (version 0.11.5)