FastQCFastQC Report
Wed 14 Nov 2018
000000000-BMH75_l01_n01_GAP1_CNV_id_barcode_d701.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-BMH75_l01_n01_GAP1_CNV_id_barcode_d701.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10206525
Sequences flagged as poor quality0
Sequence length101
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGCGAT538550.093.7740259
CATAGGT560350.093.711529
CGCATAT901350.093.577139
TGGAAGT645650.093.469769
AGTGATT560600.093.4409569
CCGGGCT978150.093.421779
GAATCGT1204450.093.3791359
ACATAGG134250.093.3724448
GTGGAAG100750.093.302738
TCCGGGC295300.093.2467048
GGAATCG208350.093.221758
CCCGGGC290800.093.203238
CGCTTGA359150.093.201318
CAGTGAT190600.093.180758
TAGTGAT152550.093.131758
CTGGAAG209400.092.935778
GCATAGG100700.092.924528
TATGCGA150850.092.9217768
TTCCGGG84350.092.916427
CCATAGG164400.092.8908168
Produced by FastQC (version 0.11.5)