FastQCFastQC Report
Mon 23 Oct 2017
000000000-BH5K9_l01n01.331000000a0c5c.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-BH5K9_l01n01.331000000a0c5c.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13939585
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGCGAT1466200.0142.354579
CCGGGCT1180950.0142.34799
TCCGGGC361900.0142.27558
CGCATAT898200.0142.15079
AGTGATT1354000.0142.044339
TGGAAGT759800.0141.56499
CATGCGA478200.0141.512978
TCCCGGG104500.0140.976077
CAGTGAT482450.0140.942588
CCCGGGC349500.0140.89278
GTCCGGG61700.0140.769877
ATCCGGG92300.0140.60137
CGCTTGA606300.0140.527798
GATGCGA233200.0140.39888
CACCGGG91350.0140.396847
CATAGGT190600.0140.35949
TATGCGA424000.0139.989978
CTCCGGG106000.0139.80197
AGCCGGG48750.0139.497447
CCCCGGG104100.0139.289147
Produced by FastQC (version 0.11.2)