FastQCFastQC Report
Tue 15 Aug 2017
000000000-BDGGG_l01n02_trinidad9.352000000998f0.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-BDGGG_l01n02_trinidad9.352000000998f0.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2354075
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATTGG9300.017.6612911
TATTGGG10600.015.4952832
TAGCCCG2405.0931703E-1115.0000015
GTATAGG8250.015.01
TCTAGAC3950.014.8101263
ACTGTGC6500.014.5384628
CTAGGAC5000.014.4000013
CCTACAC6300.014.2857143
GTGTAGG6250.014.0400011
CGTTCGT7400.013.68243311
CCTATAC8350.013.4730543
GACGTTA2359.03492E-913.40425520
GGACTGC5100.012.7941186
TAGACTG4750.012.7894745
ATTCGCG4050.012.77777837
TTCGTGG8300.012.74096413
GCGTTCG7550.012.51655710
TAGACGT1801.6950367E-512.54
ACAGTGC5400.012.4999998
ATTGGGT10450.012.4880383
Produced by FastQC (version 0.11.2)