MultiQC Report

A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

General Statistics

Showing ¹⁹²/₁₉₂ rows and ³/₅ columns.

Sample Name	% Dups	% GC	Length	% Failed	M Seqs
000000000-B56MK_l01n01_pr8-vww_1-1.351000000a11be	65.8%	42%	151 bp	25%	0.1
000000000-B56MK_l01n01_pr8-vww_1-10.351000000a11d8	73.6%	40%	151 bp	17%	0.1
000000000-B56MK_l01n01_pr8-vww_1-100.351000000a11e5	80.5%	40%	151 bp	17%	0.1
000000000-B56MK_l01n01_pr8-vww_1-5.351000000a11cb	75.4%	41%	151 bp	17%	0.1
000000000-B56MK_l01n01_pr8-vww_10-1.351000000a1195	72.9%	44%	151 bp	17%	0.1
000000000-B56MK_l01n01_pr8-vww_100-1.351000000a1188	79.2%	44%	151 bp	17%	0.1
000000000-B56MK_l01n01_pr8-vww_5-1.351000000a11a2	68.2%	43%	151 bp	17%	0.1
000000000-B56MK_l01n01_pr8_a2.351000000a0d8f	82.9%	44%	151 bp	33%	0.2
000000000-B56MK_l01n01_pr8_c6.351000000a0fa7	83.7%	44%	151 bp	25%	0.2
000000000-B56MK_l01n01_pr8_d4.351000000a0eb4	80.0%	44%	151 bp	33%	0.1
000000000-B56MK_l01n01_pr8_f12.351000000a12d7	87.2%	44%	151 bp	17%	0.3
000000000-B56MK_l01n01_s1_100.351000000a0d08	35.7%	44%	151 bp	8%	0.2
000000000-B56MK_l01n01_s1_137.351000000a0d15	73.0%	41%	151 bp	25%	0.2
000000000-B56MK_l01n01_s1_249.351000000a0d22	83.5%	40%	151 bp	17%	0.2
000000000-B56MK_l01n01_s1_264.351000000a0d3f	70.1%	41%	151 bp	17%	0.1
000000000-B56MK_l01n01_s1_274.351000000a0d4c	83.5%	40%	151 bp	17%	0.2
000000000-B56MK_l01n01_s1_279.351000000a0d59	83.5%	40%	151 bp	17%	0.2
000000000-B56MK_l01n01_s1_280.351000000a0d65	80.0%	41%	151 bp	25%	0.2
000000000-B56MK_l01n01_s1_282.351000000a0d72	85.6%	40%	151 bp	33%	0.2
000000000-B56MK_l01n01_s1_284.351000000a0d9c	70.4%	41%	151 bp	25%	0.2
000000000-B56MK_l01n01_s1_285.351000000a0da9	82.4%	41%	151 bp	25%	0.2
000000000-B56MK_l01n01_s1_286.351000000a0db5	37.8%	44%	151 bp	17%	0.1
000000000-B56MK_l01n01_s1_291.351000000a0dc2	30.1%	43%	151 bp	25%	0.2
000000000-B56MK_l01n01_s1_297.351000000a0ddf	80.4%	40%	151 bp	25%	0.2
000000000-B56MK_l01n01_s1_302.351000000a0dec	31.8%	43%	151 bp	17%	0.1
000000000-B56MK_l01n01_s1_306.351000000a0df9	82.8%	40%	151 bp	17%	0.2
000000000-B56MK_l01n01_s1_310.351000000a0e07	34.6%	44%	151 bp	8%	0.2
000000000-B56MK_l01n01_s1_316.351000000a0e14	83.6%	40%	151 bp	25%	0.2
000000000-B56MK_l01n01_s1_318.351000000a0e21	34.0%	44%	151 bp	17%	0.2
000000000-B56MK_l01n01_s1_320.351000000a0e3e	49.8%	42%	151 bp	17%	0.1
000000000-B56MK_l01n01_s1_322.351000000a0e4b	31.6%	43%	151 bp	17%	0.2
000000000-B56MK_l01n01_s1_323.351000000a0e58	23.9%	44%	151 bp	8%	0.1
000000000-B56MK_l01n01_s1_325.351000000a0e64	26.7%	43%	151 bp	17%	0.1
000000000-B56MK_l01n01_s1_327.351000000a0e71	84.0%	40%	151 bp	17%	0.2
000000000-B56MK_l01n01_s1_328.351000000a0e8e	70.4%	41%	151 bp	25%	0.2
000000000-B56MK_l01n01_s1_333.351000000a0e9b	74.1%	41%	151 bp	25%	0.1
000000000-B56MK_l01n01_s1_337.351000000a0ea8	33.5%	43%	151 bp	8%	0.2
000000000-B56MK_l01n01_s1_338.351000000a0ec1	66.4%	40%	151 bp	17%	0.1
000000000-B56MK_l01n01_s1_340.351000000a0ede	26.4%	43%	151 bp	8%	0.1
000000000-B56MK_l01n01_s1_344.351000000a0eeb	41.7%	40%	151 bp	8%	0.0
000000000-B56MK_l01n01_s1_346.351000000a0ef8	27.0%	43%	151 bp	17%	0.1
000000000-B56MK_l01n01_s1_347.351000000a0f06	39.2%	42%	151 bp	17%	0.1
000000000-B56MK_l01n01_s1_348.351000000a0f13	29.2%	43%	151 bp	17%	0.1
000000000-B56MK_l01n01_s1_361.351000000a0f20	73.2%	40%	151 bp	17%	0.1
000000000-B56MK_l01n01_s1_363.351000000a0f3d	27.4%	44%	151 bp	17%	0.0
000000000-B56MK_l01n01_s1_366.351000000a0f4a	36.4%	42%	151 bp	8%	0.1
000000000-B56MK_l01n01_s1_368.351000000a0f57	47.8%	42%	151 bp	17%	0.1
000000000-B56MK_l01n01_s1_369.351000000a0f63	70.9%	41%	151 bp	25%	0.1
000000000-B56MK_l01n01_s1_373.351000000a0f70	64.8%	42%	151 bp	17%	0.3
000000000-B56MK_l01n01_s1_377.351000000a0f8d	21.4%	45%	151 bp	17%	0.1
000000000-B56MK_l01n01_s1_379.351000000a0f9a	81.8%	40%	151 bp	33%	0.1
000000000-B56MK_l01n01_s1_380.351000000a0fb3	60.7%	41%	151 bp	17%	0.1
000000000-B56MK_l01n01_s1_383.351000000a0fc0	69.9%	41%	151 bp	25%	0.1
000000000-B56MK_l01n01_s1_385.351000000a0fdd	73.8%	42%	151 bp	33%	0.1
000000000-B56MK_l01n01_s1_390.351000000a0fea	77.5%	40%	151 bp	17%	0.1
000000000-B56MK_l01n01_s1_394.351000000a0ff7	79.1%	41%	151 bp	33%	0.2
000000000-B56MK_l01n01_s1_395.351000000a1002	78.9%	40%	151 bp	25%	0.2
000000000-B56MK_l01n01_s1_398.351000000a101f	31.8%	44%	151 bp	17%	0.0
000000000-B56MK_l01n01_s1_402.351000000a102c	80.8%	40%	151 bp	25%	0.1
000000000-B56MK_l01n01_s1_403.351000000a1039	68.3%	41%	151 bp	17%	0.1
000000000-B56MK_l01n01_s1_412.351000000a106f	78.5%	40%	151 bp	33%	0.2
000000000-B56MK_l01n01_s1_418.351000000a107c	78.5%	41%	151 bp	25%	0.3
000000000-B56MK_l01n01_s1_420.351000000a1089	71.2%	41%	151 bp	17%	0.1
000000000-B56MK_l01n01_s1_421.351000000a1096	36.4%	44%	151 bp	8%	0.1
000000000-B56MK_l01n01_s1_425.351000000a10a3	66.4%	43%	151 bp	17%	0.1
000000000-B56MK_l01n01_s1_428.351000000a10bf	33.0%	46%	151 bp	8%	0.1
000000000-B56MK_l01n01_s1_434.351000000a10cc	76.5%	40%	151 bp	17%	0.1
000000000-B56MK_l01n01_s1_436.351000000a10d9	66.2%	42%	151 bp	33%	0.1
000000000-B56MK_l01n01_s1_443.351000000a10e6	74.0%	41%	151 bp	25%	0.1
000000000-B56MK_l01n01_s1_445.351000000a10f3	83.9%	40%	151 bp	25%	0.2
000000000-B56MK_l01n01_s1_450.351000000a1101	74.8%	41%	151 bp	25%	0.1
000000000-B56MK_l01n01_s1_451.351000000a111e	60.0%	41%	151 bp	25%	0.1
000000000-B56MK_l01n01_s1_460.351000000a112b	64.4%	39%	151 bp	25%	0.1
000000000-B56MK_l01n01_s1_463.351000000a1138	60.5%	40%	151 bp	17%	0.0
000000000-B56MK_l01n01_s1_468.351000000a1145	76.3%	40%	151 bp	17%	0.1
000000000-B56MK_l01n01_s1_472.351000000a1152	72.6%	40%	151 bp	17%	0.1
000000000-B56MK_l01n01_s1_dakar-41667.351000000a127a	85.3%	50%	151 bp	17%	0.2
000000000-B56MK_l01n01_s1_dakar-41671.351000000a1287	83.7%	50%	151 bp	25%	0.2
000000000-B56MK_l01n01_s1_extraction_neg_ctrl.351000000a116e	26.6%	42%	151 bp	25%	0.0
000000000-B56MK_l01n01_s1_fss-13025.351000000a121d	84.8%	50%	151 bp	17%	0.2
000000000-B56MK_l01n01_s1_hb-2016-1840.351000000a126d	84.4%	50%	151 bp	25%	0.2
000000000-B56MK_l01n01_s1_hrv14.351000000a12bd	46.7%	46%	151 bp	17%	0.2
000000000-B56MK_l01n01_s1_hrv16.351000000a12ca	28.3%	47%	151 bp	17%	0.1
000000000-B56MK_l01n01_s1_ibh-30656.351000000a122a	85.8%	50%	151 bp	17%	0.2
000000000-B56MK_l01n01_s1_lp_neg_ctrl.351000000a12f1	0.0%	43%	151 bp	25%	0.0
000000000-B56MK_l01n01_s1_mex-2-81.351000000a1244	84.2%	50%	151 bp	17%	0.2
000000000-B56MK_l01n01_s1_mex-i-44.351000000a1251	84.7%	50%	151 bp	17%	0.2
000000000-B56MK_l01n01_s1_mr766a.351000000a1294	82.4%	50%	151 bp	17%	0.2
000000000-B56MK_l01n01_s1_ny238_plasmid.351000000a12e4	81.4%	47%	151 bp	25%	0.2
000000000-B56MK_l01n01_s1_p6-740.351000000a11f2	80.9%	51%	151 bp	25%	0.1
000000000-B56MK_l01n01_s1_pa-259459.351000000a1200	80.8%	50%	151 bp	17%	0.2
000000000-B56MK_l01n01_s1_prvabc59b.351000000a12a1	83.0%	50%	151 bp	17%	0.2
000000000-B56MK_l01n01_s1_rt-pcr_neg_ctrl.351000000a1053	5.1%	47%	151 bp	25%	0.0
000000000-B56MK_l01n01_s1_zk-hu-0163.351000000a1237	80.9%	50%	151 bp	17%	0.1
000000000-B56MK_l01n01_vww_10e3_p1.351000000a1046	80.2%	40%	151 bp	33%	0.1
000000000-B56MK_l01n01_vww_10e3_p2.351000000a117b	70.0%	41%	151 bp	17%	0.2
000000000-B56MK_l01n02_pr8-vww_1-1.352000000a11bb	51.5%	42%	151 bp	17%	0.1
000000000-B56MK_l01n02_pr8-vww_1-10.352000000a11d5	67.5%	40%	151 bp	17%	0.1
000000000-B56MK_l01n02_pr8-vww_1-100.352000000a11e2	72.8%	40%	151 bp	17%	0.1
000000000-B56MK_l01n02_pr8-vww_1-5.352000000a11c8	70.0%	41%	151 bp	17%	0.1
000000000-B56MK_l01n02_pr8-vww_10-1.352000000a1192	68.8%	44%	151 bp	25%	0.1
000000000-B56MK_l01n02_pr8-vww_100-1.352000000a1185	71.1%	44%	151 bp	17%	0.1
000000000-B56MK_l01n02_pr8-vww_5-1.352000000a11af	63.4%	43%	151 bp	17%	0.1
000000000-B56MK_l01n02_pr8_a2.352000000a0d8c	74.6%	44%	151 bp	25%	0.2
000000000-B56MK_l01n02_pr8_c6.352000000a0fa4	80.6%	44%	151 bp	17%	0.2
000000000-B56MK_l01n02_pr8_d4.352000000a0eb1	72.4%	44%	151 bp	25%	0.1
000000000-B56MK_l01n02_pr8_f12.352000000a12d4	79.7%	44%	151 bp	25%	0.3
000000000-B56MK_l01n02_s1_100.352000000a0d05	30.9%	44%	151 bp	17%	0.2
000000000-B56MK_l01n02_s1_137.352000000a0d12	69.3%	41%	151 bp	25%	0.2
000000000-B56MK_l01n02_s1_249.352000000a0d2f	79.1%	40%	151 bp	17%	0.2
000000000-B56MK_l01n02_s1_264.352000000a0d3c	57.3%	41%	151 bp	17%	0.1
000000000-B56MK_l01n02_s1_274.352000000a0d49	77.5%	40%	151 bp	25%	0.2
000000000-B56MK_l01n02_s1_279.352000000a0d56	78.2%	40%	151 bp	17%	0.2
000000000-B56MK_l01n02_s1_280.352000000a0d62	74.6%	41%	151 bp	17%	0.2
000000000-B56MK_l01n02_s1_282.352000000a0d7f	83.6%	40%	151 bp	33%	0.2
000000000-B56MK_l01n02_s1_284.352000000a0d99	64.6%	41%	151 bp	25%	0.2
000000000-B56MK_l01n02_s1_285.352000000a0da6	77.7%	41%	151 bp	17%	0.2
000000000-B56MK_l01n02_s1_286.352000000a0db2	31.1%	44%	151 bp	17%	0.1
000000000-B56MK_l01n02_s1_291.352000000a0dcf	26.9%	43%	151 bp	17%	0.2
000000000-B56MK_l01n02_s1_297.352000000a0ddc	75.1%	40%	151 bp	33%	0.2
000000000-B56MK_l01n02_s1_302.352000000a0de9	27.5%	43%	151 bp	17%	0.1
000000000-B56MK_l01n02_s1_306.352000000a0df6	77.9%	40%	151 bp	17%	0.2
000000000-B56MK_l01n02_s1_310.352000000a0e04	25.3%	44%	151 bp	8%	0.2
000000000-B56MK_l01n02_s1_316.352000000a0e11	70.1%	40%	151 bp	17%	0.2
000000000-B56MK_l01n02_s1_318.352000000a0e2e	26.6%	44%	151 bp	8%	0.2
000000000-B56MK_l01n02_s1_320.352000000a0e3b	30.3%	42%	151 bp	8%	0.1
000000000-B56MK_l01n02_s1_322.352000000a0e48	23.8%	43%	151 bp	8%	0.2
000000000-B56MK_l01n02_s1_323.352000000a0e55	17.8%	44%	151 bp	8%	0.1
000000000-B56MK_l01n02_s1_325.352000000a0e61	19.7%	43%	151 bp	8%	0.1
000000000-B56MK_l01n02_s1_327.352000000a0e7e	71.1%	40%	151 bp	25%	0.2
000000000-B56MK_l01n02_s1_328.352000000a0e8b	67.1%	41%	151 bp	17%	0.2
000000000-B56MK_l01n02_s1_333.352000000a0e98	72.6%	41%	151 bp	25%	0.1
000000000-B56MK_l01n02_s1_337.352000000a0ea5	33.0%	43%	151 bp	17%	0.2
000000000-B56MK_l01n02_s1_338.352000000a0ece	64.5%	40%	151 bp	17%	0.1
000000000-B56MK_l01n02_s1_340.352000000a0edb	25.5%	43%	151 bp	8%	0.1
000000000-B56MK_l01n02_s1_344.352000000a0ee8	34.2%	40%	151 bp	8%	0.0
000000000-B56MK_l01n02_s1_346.352000000a0ef5	26.3%	43%	151 bp	17%	0.1
000000000-B56MK_l01n02_s1_347.352000000a0f03	36.5%	42%	151 bp	8%	0.1
000000000-B56MK_l01n02_s1_348.352000000a0f10	27.7%	43%	151 bp	8%	0.1
000000000-B56MK_l01n02_s1_361.352000000a0f2d	73.0%	40%	151 bp	17%	0.1
000000000-B56MK_l01n02_s1_363.352000000a0f3a	26.3%	44%	151 bp	17%	0.0
000000000-B56MK_l01n02_s1_366.352000000a0f47	35.3%	42%	151 bp	17%	0.1
000000000-B56MK_l01n02_s1_368.352000000a0f54	47.2%	42%	151 bp	17%	0.1
000000000-B56MK_l01n02_s1_369.352000000a0f60	67.4%	41%	151 bp	25%	0.1
000000000-B56MK_l01n02_s1_373.352000000a0f7d	63.7%	42%	151 bp	25%	0.3
000000000-B56MK_l01n02_s1_377.352000000a0f8a	19.1%	45%	151 bp	8%	0.1
000000000-B56MK_l01n02_s1_379.352000000a0f97	78.4%	40%	151 bp	33%	0.1
000000000-B56MK_l01n02_s1_380.352000000a0fb0	50.6%	41%	151 bp	17%	0.1
000000000-B56MK_l01n02_s1_383.352000000a0fcd	66.8%	41%	151 bp	17%	0.1
000000000-B56MK_l01n02_s1_385.352000000a0fda	72.9%	42%	151 bp	33%	0.1
000000000-B56MK_l01n02_s1_390.352000000a0fe7	73.7%	40%	151 bp	25%	0.1
000000000-B56MK_l01n02_s1_394.352000000a0ff4	78.0%	41%	151 bp	33%	0.2
000000000-B56MK_l01n02_s1_395.352000000a100f	75.1%	40%	151 bp	17%	0.2
000000000-B56MK_l01n02_s1_398.352000000a101c	31.2%	44%	151 bp	17%	0.0
000000000-B56MK_l01n02_s1_402.352000000a1029	79.1%	40%	151 bp	25%	0.1
000000000-B56MK_l01n02_s1_403.352000000a1036	61.7%	41%	151 bp	17%	0.1
000000000-B56MK_l01n02_s1_412.352000000a106c	76.6%	41%	151 bp	25%	0.2
000000000-B56MK_l01n02_s1_418.352000000a1079	77.6%	41%	151 bp	33%	0.3
000000000-B56MK_l01n02_s1_420.352000000a1086	63.0%	41%	151 bp	17%	0.1
000000000-B56MK_l01n02_s1_421.352000000a1093	31.1%	45%	151 bp	8%	0.1
000000000-B56MK_l01n02_s1_425.352000000a10a0	59.1%	43%	151 bp	33%	0.1
000000000-B56MK_l01n02_s1_428.352000000a10bc	24.5%	46%	151 bp	8%	0.1
000000000-B56MK_l01n02_s1_434.352000000a10c9	70.6%	40%	151 bp	17%	0.1
000000000-B56MK_l01n02_s1_436.352000000a10d6	61.8%	42%	151 bp	25%	0.1
000000000-B56MK_l01n02_s1_443.352000000a10e3	68.2%	41%	151 bp	25%	0.1
000000000-B56MK_l01n02_s1_445.352000000a10f0	82.5%	40%	151 bp	17%	0.2
000000000-B56MK_l01n02_s1_450.352000000a110e	71.2%	41%	151 bp	17%	0.1
000000000-B56MK_l01n02_s1_451.352000000a111b	58.5%	41%	151 bp	25%	0.1
000000000-B56MK_l01n02_s1_460.352000000a1128	62.6%	39%	151 bp	25%	0.1
000000000-B56MK_l01n02_s1_463.352000000a1135	51.4%	40%	151 bp	17%	0.0
000000000-B56MK_l01n02_s1_468.352000000a1142	73.1%	40%	151 bp	17%	0.1
000000000-B56MK_l01n02_s1_472.352000000a115f	70.5%	40%	151 bp	17%	0.1
000000000-B56MK_l01n02_s1_dakar-41667.352000000a1277	81.9%	50%	151 bp	17%	0.2
000000000-B56MK_l01n02_s1_dakar-41671.352000000a1284	69.8%	50%	151 bp	17%	0.2
000000000-B56MK_l01n02_s1_extraction_neg_ctrl.352000000a116b	26.1%	42%	151 bp	17%	0.0
000000000-B56MK_l01n02_s1_fss-13025.352000000a121a	81.6%	50%	151 bp	17%	0.2
000000000-B56MK_l01n02_s1_hb-2016-1840.352000000a126a	80.2%	50%	151 bp	25%	0.2
000000000-B56MK_l01n02_s1_hrv14.352000000a12ba	38.2%	46%	151 bp	17%	0.2
000000000-B56MK_l01n02_s1_hrv16.352000000a12c7	26.4%	47%	151 bp	25%	0.1
000000000-B56MK_l01n02_s1_ibh-30656.352000000a1227	82.1%	51%	151 bp	17%	0.2
000000000-B56MK_l01n02_s1_lp_neg_ctrl.352000000a12fe	0.6%	43%	151 bp	17%	0.0
000000000-B56MK_l01n02_s1_mex-2-81.352000000a1241	79.9%	50%	151 bp	17%	0.2
000000000-B56MK_l01n02_s1_mex-i-44.352000000a125e	81.3%	50%	151 bp	17%	0.2
000000000-B56MK_l01n02_s1_mr766a.352000000a1291	73.0%	50%	151 bp	17%	0.2
000000000-B56MK_l01n02_s1_ny238_plasmid.352000000a12e1	68.5%	47%	151 bp	25%	0.2
000000000-B56MK_l01n02_s1_p6-740.352000000a11ff	73.0%	51%	151 bp	25%	0.1
000000000-B56MK_l01n02_s1_pa-259459.352000000a120d	73.5%	50%	151 bp	17%	0.2
000000000-B56MK_l01n02_s1_prvabc59b.352000000a12ae	69.5%	51%	151 bp	25%	0.2
000000000-B56MK_l01n02_s1_rt-pcr_neg_ctrl.352000000a1050	3.7%	46%	151 bp	33%	0.0
000000000-B56MK_l01n02_s1_zk-hu-0163.352000000a1234	69.0%	50%	151 bp	17%	0.1
000000000-B56MK_l01n02_vww_10e3_p1.352000000a1043	78.7%	40%	151 bp	25%	0.1
000000000-B56MK_l01n02_vww_10e3_p2.352000000a1178	66.6%	41%	151 bp	17%	0.2

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Group	Column	Description	ID	Scale
\|\|	FastQC	% Dups	% Duplicate Reads	`percent_duplicates`	None
\|\|	FastQC	% GC	Average % GC Content	`percent_gc`	None
\|\|	FastQC	Length	Average Sequence Length (bp)	`avg_sequence_length`	None
\|\|	FastQC	% Failed	Percentage of modules failed in FastQC report (includes those not plotted here)	`percent_fails`	None
\|\|	FastQC	M Seqs	Total Sequences (millions)	`total_sequences`	read_count

Lane Statistics

Showing ¹/₁ rows and ⁴/₄ columns.

Lane	Total # of Single-End Reads	Total # PF Reads	Undetermined	% PhiX Aligned
1.0	15587777	13745534	3.8	1.2%

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Sort	Column	Description	ID	Scale
\|\|	Total # of Single-End Reads	Total # of Single-End Reads	`Total # of Single-End Reads`	None
\|\|	Total # PF Reads	Total # PF Reads	`Total # PF Reads`	None
\|\|	Undetermined	Undetermined	`Undetermined`	None
\|\|	% PhiX Aligned	% PhiX Aligned	`% PhiX Aligned`	None

Lane 1 Demultiplexing Report

Lane 1 Demultiplexing Report
Total Read Count: Total number of PF (Passing Filter) reads in this library.
Portion: The proportion of reads that represent the individual library in the entire Library Pool.
Perfect: The percentage of reads in this library which have a barcode perfectly matching the barcode specified in TuboWeb. The remainder of reads have mismatches upto the max number of mismatches specified in TuboWeb (Allowed barcode mismatch option in your Library Pool).

Showing ⁹⁶/₉₆ rows and ³/₃ columns.

Library	Total Read Count	Portion (%)	Perfect (%)
s1_zk-hu-0163	128095	1.0	96.3
s1_460	63168	0.5	97.4
s1_420	118780	0.9	97.8
pr8-vww_1-100	130864	1.0	97.8
s1_333	149465	1.1	98.7
s1_366	110080	0.8	98.4
s1_418	304064	2.3	98.4
s1_mex-2-81	180781	1.4	98.1
s1_284	171996	1.3	98.1
s1_468	89668	0.7	97.1
s1_338	109594	0.8	98.6
s1_280	247382	1.9	98.4
s1_320	100030	0.8	96.2
pr8-vww_1-1	78846	0.6	96.6
pr8-vww_10-1	104419	0.8	98.7
s1_264	135905	1.0	97.0
s1_436	137285	1.0	98.3
s1_361	123792	0.9	98.8
s1_385	104547	0.8	98.4
s1_306	190404	1.4	97.7
s1_dakar-41667	174384	1.3	98.5
s1_434	101768	0.8	98.0
s1_316	191582	1.4	98.6
s1_328	155290	1.2	98.0
s1_445	182099	1.4	97.6
s1_285	193737	1.5	97.9
vww_10e3_p1	127582	1.0	98.2
s1_fss-13025	184206	1.4	98.9
s1_ny238_plasmid	167151	1.3	97.9
s1_403	91487	0.7	96.7
s1_dakar-41671	154192	1.2	97.8
s1_443	134033	1.0	97.9
s1_hb-2016-1840	179868	1.4	98.0
pr8-vww_1-5	130896	1.0	98.0
s1_421	57791	0.4	98.7
s1_450	62309	0.5	96.9
s1_p6-740	142475	1.1	98.1
vww_10e3_p2	153975	1.2	98.5
s1_425	93638	0.7	98.4
s1_369	137475	1.0	98.2
s1_322	151235	1.1	97.8
s1_368	118893	0.9	98.3
s1_402	137254	1.0	98.4
pr8-vww_1-10	96020	0.7	98.2
s1_249	207349	1.6	98.8
s1_394	184898	1.4	98.5
pr8_c6	168766	1.3	98.7
s1_428	60234	0.5	96.6
pr8_a2	154473	1.2	97.4
s1_398	5782	0.0	95.8
pr8-vww_5-1	84595	0.6	98.5
s1_363	33769	0.3	97.2
s1_337	178037	1.3	98.7
s1_prvabc59b	158655	1.2	98.7
s1_340	105896	0.8	98.3
s1_327	170153	1.3	98.4
pr8_d4	124214	0.9	97.0
s1_310	175908	1.3	97.6
s1_380	65171	0.5	96.4
s1_297	166126	1.3	97.7
s1_137	213847	1.6	98.9
s1_383	138234	1.0	98.2
s1_325	125903	1.0	97.7
s1_pa-259459	190320	1.4	97.8
s1_ibh-30656	229417	1.7	98.8
s1_lp_neg_ctrl	338.0	0.0	47.3
s1_279	227097	1.7	98.5
s1_100	179768	1.4	98.2
s1_346	149897	1.1	98.4
s1_mex-i-44	207031	1.6	98.3
s1_286	114484	0.9	96.4
s1_377	106640	0.8	97.8
s1_412	157015	1.2	98.2
s1_347	116974	0.9	97.8
s1_274	220608	1.7	98.4
s1_395	156888	1.2	97.9
s1_rt-pcr_neg_ctrl	1195	0.0	82.0
s1_463	31713	0.2	95.1
s1_344	37500	0.3	97.3
s1_hrv14	224884	1.7	96.8
pr8_f12	269406	2.0	98.3
s1_hrv16	76345	0.6	98.3
s1_472	65883	0.5	97.1
s1_mr766a	176396	1.3	98.7
s1_extraction_neg_ctrl	4362	0.0	95.5
s1_323	137855	1.0	98.1
s1_379	139110	1.1	98.7
s1_302	118471	0.9	97.3
pr8-vww_100-1	115481	0.9	97.9
s1_390	129523	1.0	98.1
s1_451	65073	0.5	97.7
s1_318	165777	1.3	98.5
s1_282	209620	1.6	98.6
s1_373	285547	2.2	98.5
s1_348	121974	0.9	98.7
s1_291	164536	1.2	97.7

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Sort	Column	Description	ID	Scale
\|\|	Total Read Count	Total Read Count	`Total Read Count`	None
\|\|	Portion (%)	Portion (%)	`Portion (%)`	None
\|\|	Perfect (%)	Perfect (%)	`Perfect (%)`	None

FastQC

FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

Sequence Quality Histograms

The mean quality value across each base position in the read. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Sequence Quality Scores

The number of reads with average quality scores. Shows if a subset of reads has poor quality. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Base Sequence Content

The proportion of each base position for which each of the four normal DNA bases has been called. See the FastQC help.

Click a heatmap row to see a line plot for that dataset.

rollover for sample name

Position: -

%T: -

%C: -

%A: -

%G: -

Per Sequence GC Content

The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Base N Content

The percentage of base calls at each position for which an N was called. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Sequence Length Distribution

All samples have sequences of a single length (151bp).

Sequence Duplication Levels

The relative level of duplication found for every sequence. See the FastQC help.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Overrepresented sequences

The total amount of overrepresented sequences found in each library. See the FastQC help for further information.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Adapter Content

The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. See the FastQC help. Only samples with ≥ 0.1% adapter contamination are shown.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

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Per Sequence GC Content

Per Base N Content

Sequence Length Distribution

Sequence Duplication Levels

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Adapter Content

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Per Sequence GC Content

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Sequence Length Distribution

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