FastQCFastQC Report
Thu 4 Jan 2018
000000000-B4NWY_l01n01_d4_wholepop_270.351000000b0c72.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-B4NWY_l01n01_d4_wholepop_270.351000000b0c72.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2107617
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCACGGT151.2655073E-4143.973561
CTGCTTT306.8394E-10143.973561
GTTTGTA151.2655073E-4143.973561
CTTAAGT306.8394E-10143.973561
GTTGAGG151.2655073E-4143.973563
CAGGTTG450.0143.973563
GTGTTCC151.2655073E-4143.973562
GTTGAAC151.2655073E-4143.973561
GTGTTAC306.8394E-10143.973561
GTCATAG650.0143.973563
CGTGGTG306.8394E-10143.973563
GTGCAGC151.2655073E-4143.973561
AACCGTC306.8394E-10143.973561
GGGTGTG151.2655073E-4143.973563
TTAGGCA151.2655073E-4143.973562
AGGTAGA900.0143.973564
GGGGACC151.2655073E-4143.973562
GAGTGAT151.2655073E-4143.973561
TAGAGAT151.2655073E-4143.973561
GGGTGGG151.2655073E-4143.973563
Produced by FastQC (version 0.11.2)