[2017-04-18 14:07:36,981] multiqc [DEBUG ] No MultiQC config found: /opt/local/tubo/env/python3/lib/python3.4/site-packages/multiqc_config.yaml [2017-04-18 14:07:36,981] multiqc [DEBUG ] No MultiQC config found: /home/mk5636/.multiqc_config.yaml [2017-04-18 14:07:36,981] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2017-04-18 14:07:36,982] multiqc [DEBUG ] Command used: /opt/local/tubo/env/python3/bin/multiqc /home/mk5636/fastqc-delivery/000000000-AVA3A/1 [2017-04-18 14:07:37,252] multiqc [INFO ] This is MultiQC v1.0.dev0 [2017-04-18 14:07:37,253] multiqc [DEBUG ] Command : /opt/local/tubo/env/python3/bin/multiqc /home/mk5636/fastqc-delivery/000000000-AVA3A/1 [2017-04-18 14:07:37,253] multiqc [DEBUG ] Working dir : /mnt/gencore/sites/core-fastqc.bio.nyu.edu/html/000000000-AVA3A/1 [2017-04-18 14:07:37,253] multiqc [INFO ] Template : default [2017-04-18 14:07:37,254] multiqc [INFO ] Searching '/home/mk5636/fastqc-delivery/000000000-AVA3A/1' [2017-04-18 14:07:37,254] multiqc [DEBUG ] Analysing modules: rna_seqc, custom_content, peddy, methylQA, qualimap, preseq, quast, rseqc, busco, goleft_indexcov, snpeff, gatk, htseq, bcftools, featureCounts, picard, prokka, samblaster, samtools, bamtools, bismark, hicup, salmon, kallisto, slamdunk, star, tophat, bowtie2, bowtie1, cutadapt, trimmomatic, skewer, fastq_screen, fastqc, clusterflow [2017-04-18 14:07:37,255] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmp9tbqcum5 [2017-04-18 14:07:37,542] multiqc.modules.rna_seqc.rna_seqc [DEBUG ] Could not find any RNA-SeQC data in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,548] multiqc.modules.custom_content.custom_content [DEBUG ] No custom content found [2017-04-18 14:07:37,553] multiqc.modules.peddy.peddy [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,556] multiqc.modules.methylQA.methylQA [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,560] multiqc.modules.qualimap.QM_BamQC [DEBUG ] Using default Qualimap thresholds: 1, 5, 10, 30, 50 [2017-04-18 14:07:37,563] multiqc.modules.qualimap.qualimap [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,573] multiqc.modules.preseq.preseq [DEBUG ] Could not find any preseq data in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,578] multiqc.modules.quast.quast [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,608] multiqc.modules.rseqc.rseqc [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,613] multiqc.modules.busco.busco [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,618] multiqc.modules.goleft_indexcov.goleft_indexcov [DEBUG ] Did not find goleft indexcov outputs in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,626] multiqc.modules.snpeff.snpeff [DEBUG ] Could not find any data in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,633] multiqc.modules.gatk.gatk [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,641] multiqc.modules.htseq.htseq [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,649] multiqc.modules.bcftools.bcftools [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,653] multiqc.modules.featureCounts.feature_counts [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,704] multiqc.modules.picard.picard [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,710] multiqc.modules.prokka.prokka [DEBUG ] Could not find any Prokka data in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,718] multiqc.modules.samblaster.samblaster [DEBUG ] Could not find any data in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,735] multiqc.modules.samtools.samtools [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,744] multiqc.modules.bamtools.bamtools [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,751] multiqc.modules.bismark.bismark [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,756] multiqc.modules.hicup.hicup [DEBUG ] Could not find any HiCUP data in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,761] multiqc.modules.salmon.salmon [DEBUG ] Could not find any Salmon data in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,767] multiqc.modules.kallisto.kallisto [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,800] multiqc.modules.slamdunk.slamdunk [DEBUG ] No slamdunk reports found. [2017-04-18 14:07:37,805] multiqc.modules.star.star [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,810] multiqc.modules.tophat.tophat [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,817] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,823] multiqc.modules.bowtie1.bowtie1 [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,831] multiqc.modules.cutadapt.cutadapt [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,839] multiqc.modules.trimmomatic.trimmomatic [DEBUG ] Could not find any Trimmomatic data in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,848] multiqc.modules.skewer.skewer [DEBUG ] Could not find any data in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,855] multiqc.modules.fastq_screen.fastq_screen [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,882] multiqc.modules.fastqc.fastqc [INFO ] Found 1 reports [2017-04-18 14:07:37,916] multiqc.modules.clusterflow.clusterflow [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AVA3A/1',) [2017-04-18 14:07:37,920] multiqc [INFO ] Report : multiqc_report.html [2017-04-18 14:07:37,924] multiqc [INFO ] Data : multiqc_data [2017-04-18 14:07:37,924] multiqc [DEBUG ] Moving data file from '/tmp/tmp9tbqcum5/multiqc_data/multiqc_general_stats.txt' to '/mnt/gencore/sites/core-fastqc.bio.nyu.edu/html/000000000-AVA3A/1/multiqc_data' [2017-04-18 14:07:37,932] multiqc [DEBUG ] Moving data file from '/tmp/tmp9tbqcum5/multiqc_data/multiqc_fastqc.txt' to '/mnt/gencore/sites/core-fastqc.bio.nyu.edu/html/000000000-AVA3A/1/multiqc_data' [2017-04-18 14:07:37,938] multiqc [DEBUG ] Moving data file from '/tmp/tmp9tbqcum5/multiqc_data/multiqc_sources.txt' to '/mnt/gencore/sites/core-fastqc.bio.nyu.edu/html/000000000-AVA3A/1/multiqc_data' [2017-04-18 14:07:38,134] multiqc [INFO ] MultiQC complete