[2017-04-06 20:00:07,326] multiqc [DEBUG ] No MultiQC config found: /opt/local/tubo/env/python3/lib/python3.4/site-packages/multiqc_config.yaml [2017-04-06 20:00:07,326] multiqc [DEBUG ] No MultiQC config found: /home/mk5636/.multiqc_config.yaml [2017-04-06 20:00:07,326] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2017-04-06 20:00:07,327] multiqc [DEBUG ] Command used: /opt/local/tubo/env/python3/bin/multiqc /home/mk5636/fastqc-delivery/000000000-AUWYC/1 [2017-04-06 20:00:07,597] multiqc [INFO ] This is MultiQC v1.0.dev0 [2017-04-06 20:00:07,598] multiqc [DEBUG ] Command : /opt/local/tubo/env/python3/bin/multiqc /home/mk5636/fastqc-delivery/000000000-AUWYC/1 [2017-04-06 20:00:07,598] multiqc [DEBUG ] Working dir : /mnt/gencore/sites/core-fastqc.bio.nyu.edu/html/000000000-AUWYC/1 [2017-04-06 20:00:07,598] multiqc [INFO ] Template : default [2017-04-06 20:00:07,599] multiqc [INFO ] Searching '/home/mk5636/fastqc-delivery/000000000-AUWYC/1' [2017-04-06 20:00:07,599] multiqc [DEBUG ] Analysing modules: rna_seqc, custom_content, peddy, methylQA, qualimap, preseq, quast, rseqc, busco, goleft_indexcov, snpeff, gatk, htseq, bcftools, featureCounts, picard, prokka, samblaster, samtools, bamtools, bismark, hicup, salmon, kallisto, slamdunk, star, tophat, bowtie2, bowtie1, cutadapt, trimmomatic, skewer, fastq_screen, fastqc, clusterflow [2017-04-06 20:00:07,600] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmp553zlk78 [2017-04-06 20:00:08,413] multiqc.modules.rna_seqc.rna_seqc [DEBUG ] Could not find any RNA-SeQC data in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:08,439] multiqc.modules.custom_content.custom_content [DEBUG ] No custom content found [2017-04-06 20:00:08,472] multiqc.modules.peddy.peddy [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:08,485] multiqc.modules.methylQA.methylQA [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:08,490] multiqc.modules.qualimap.QM_BamQC [DEBUG ] Using default Qualimap thresholds: 1, 5, 10, 30, 50 [2017-04-06 20:00:08,513] multiqc.modules.qualimap.qualimap [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:08,571] multiqc.modules.preseq.preseq [DEBUG ] Could not find any preseq data in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:08,585] multiqc.modules.quast.quast [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:08,769] multiqc.modules.rseqc.rseqc [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:08,796] multiqc.modules.busco.busco [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:08,821] multiqc.modules.goleft_indexcov.goleft_indexcov [DEBUG ] Did not find goleft indexcov outputs in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:08,872] multiqc.modules.snpeff.snpeff [DEBUG ] Could not find any data in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:08,916] multiqc.modules.gatk.gatk [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:08,959] multiqc.modules.htseq.htseq [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:09,007] multiqc.modules.bcftools.bcftools [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:09,020] multiqc.modules.featureCounts.feature_counts [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:09,406] multiqc.modules.picard.picard [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:09,416] multiqc.modules.prokka.prokka [DEBUG ] Could not find any Prokka data in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:09,464] multiqc.modules.samblaster.samblaster [DEBUG ] Could not find any data in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:09,592] multiqc.modules.samtools.samtools [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:09,635] multiqc.modules.bamtools.bamtools [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:09,662] multiqc.modules.bismark.bismark [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:09,673] multiqc.modules.hicup.hicup [DEBUG ] Could not find any HiCUP data in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:09,687] multiqc.modules.salmon.salmon [DEBUG ] Could not find any Salmon data in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:09,729] multiqc.modules.kallisto.kallisto [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:09,938] multiqc.modules.slamdunk.slamdunk [DEBUG ] No slamdunk reports found. [2017-04-06 20:00:09,958] multiqc.modules.star.star [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:09,969] multiqc.modules.tophat.tophat [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:10,012] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:10,061] multiqc.modules.bowtie1.bowtie1 [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:10,112] multiqc.modules.cutadapt.cutadapt [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:10,155] multiqc.modules.trimmomatic.trimmomatic [DEBUG ] Could not find any Trimmomatic data in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:10,202] multiqc.modules.skewer.skewer [DEBUG ] Could not find any data in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:10,215] multiqc.modules.fastq_screen.fastq_screen [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:10,524] multiqc.modules.fastqc.fastqc [INFO ] Found 16 reports [2017-04-06 20:00:10,921] multiqc.modules.clusterflow.clusterflow [DEBUG ] Could not find any reports in ('/home/mk5636/fastqc-delivery/000000000-AUWYC/1',) [2017-04-06 20:00:10,951] multiqc [INFO ] Report : multiqc_report.html [2017-04-06 20:00:10,953] multiqc [INFO ] Data : multiqc_data [2017-04-06 20:00:10,953] multiqc [DEBUG ] Moving data file from '/tmp/tmp553zlk78/multiqc_data/multiqc_general_stats.txt' to '/mnt/gencore/sites/core-fastqc.bio.nyu.edu/html/000000000-AUWYC/1/multiqc_data' [2017-04-06 20:00:10,969] multiqc [DEBUG ] Moving data file from '/tmp/tmp553zlk78/multiqc_data/multiqc_fastqc.txt' to '/mnt/gencore/sites/core-fastqc.bio.nyu.edu/html/000000000-AUWYC/1/multiqc_data' [2017-04-06 20:00:10,973] multiqc [DEBUG ] Moving data file from '/tmp/tmp553zlk78/multiqc_data/multiqc_sources.txt' to '/mnt/gencore/sites/core-fastqc.bio.nyu.edu/html/000000000-AUWYC/1/multiqc_data' [2017-04-06 20:00:11,205] multiqc [INFO ] MultiQC complete