FastQCFastQC Report
Wed 3 Aug 2016
000000000-ARM7R_l01n03.333000000663e3.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-ARM7R_l01n03.333000000663e3.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15168580
Sequences flagged as poor quality0
Sequence length251
%GC53

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTTTGCTCCCCACGCTTTCGCTCCTCAGCGTCAGTAACGACCCAGAG289287619.071501749010125No Hit
CCTGTTTGCTCCCCACGCTTTCGCACATGAGCGTCAGTACATTCCCAAGG13295688.765276644221148No Hit
CCTGTTTGCTCCCCATGCTTTCGTATCTCAGTGTCAGTATCAGGCCAGAA7785275.1324975706361435No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCATGAGCGTCAGTATTGGCCCAGGG4801833.1656424002774157No Hit
CCTGTTCGCTACCCACGCTTTCGAGCCTCAGCGTCAGTTACAAGCCAGAG4750173.1315851582679457No Hit
CCTGTTTGCTACCCACGCTTTCGAGCATGAACGTCAGTGTTATCCCAGGA4196362.7664817669155584No Hit
CCTGTTTGATACCCACGCTTTCGTGCTTCAGCGTCAGTTGTACCTTAGTA4074242.685973242056936No Hit
CCTGTTTGCTACCCACGCTTTCGCGCTTCAGCGTCAGTATCTGTCCAGTA4071722.6843119131784254No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGTGTCAGTTACAGGCCAAAA3221492.1237914162037583No Hit
CCTGTTTGCTCCCCATGCTTTCGTACCTCAGCGTCAGTATCAGTCCAGAT3054502.0137020077027645No Hit
CCTGTTTGATACCCACACTTTCGAGCCTCAGCGTCAGTTGCAGCCCGGAC2277281.5013139001805047No Hit
CCTGTTTGCTCCCCATGCTTTCGTACCTCAGCGTCAGTATTAGGCCAGAT1938161.277746499672349No Hit
CCTGTTTGCTACCCACGCTTTCGAACCTCAGTGTCAGTATGATGCCAGGA1811321.1941262794539764No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAAGCCAGAG1492780.984126398120325No Hit
CCTGTTTGCTACCCACGCTTTCGAGCCTCAGCGTCAGTTACAGACCAGAG1447950.9545718847776127No Hit
CCTGTTTGCTACCCACGCTTTCGCGCTTTAGCGTCAGTATCTGTCCAGTA1160010.7647452826830198No Hit
CCTGTTTGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGACCAGAG1157380.7630114354804471No Hit
CCTGTTCGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGACCAGAG825760.5443884661583351No Hit
CCCGTTCGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGTTTTCGTCCAGAA808280.5328646452073958No Hit
CCTGTTTGATCCCCACGCTTTCGAGCCTCAACGTCAGTCTTTGTCCAGTA757630.49947325326431347No Hit
CCCGTTCGCTCCCCTGGCTTTCGAGCCTCAGCGTCAGTTGCAGTCCAGAA729800.4811261172766337No Hit
CCTGTTCGCTCCCCACGCTTTCGTCCCTCAGCGTCAGTTATATCTTGGTA697450.4597991374274982No Hit
CCTGTTCGCTCCCCCGGCTTTCGCACTTCAGCGTCAGTTACCGTCCAGTG553420.36484628093071336No Hit
CCTGTTTGATCCCCACGCTTTCGTGCCTGAGTGTCAGTAATTGCGTAGTG529770.34925484125738865No Hit
CCTGTTTGCTCCCCACGCCTTCGAGCCTCAACGTCAGTTATCGTCCAGTA465490.30687776970553604No Hit
CCTGTTTGCTCCCCAAACTGTCGTCCCTCATCGTCAAGTATTCTATAGTT438360.288992113961887No Hit
CCTGTTCGCTCCCCACGCTTTCGTCCATCAGCGTCAATCAATTGTTAGTA420220.2770331830665758No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCATGAGCGTCAGTGCAGGCCCAGGG402400.26528521456853577No Hit
CCTGTTTGCTCCCCTAGCTTTCGCACTTCAGCGTCAGTTACCGTCCAGTG397570.26210100088472355No Hit
CCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTCGTCCAGGG385730.2542953921856891No Hit
CCTGTTCGATACCCGCACCTTCGAGCTTAAGCGTCAGTTACACTCCCGTA381060.2512166597005125No Hit
CCTGTTTGCTACCCACGCTTTCGAGCCTCAGCGTCAGTTTTGGTCCAGCA374000.24656230181071662No Hit
CCTGTTTGCTCCCCACGCTTTCGCTCCTCAGCGTCAGTAACGACCCCGAG365500.24095861313320036No Hit
CCTGTTCGCTCCCCACGCTTTCGCTCCTCAGCGTCAGTAACGGCCCAGAG352590.2324475989182903No Hit
CCTGTTTGCTACCCACGCTTTCGGGCATGAACGTCAGTGTTATCCCAGGA350970.23137960178210484No Hit
ACTGTTTGCTCCCCACGCTTTCGCTCCTCAGCGTCAGTAACGACCCAGAG342560.2258352462788211No Hit
CCTGTTTGCTCCCCACGCTTTCGTGCATGAGCGTCAGTACAGGCCCAGGG331790.21873504309566222No Hit
CCTGTTTGATCCCCACGCTTTCGCACATCAGCGTCAGTTACAGACCAGAA325030.21427846245330812No Hit
CCTGTTCGCTACCCACGCTTTCGCGCCTCAGCGTCAGTTACAAGCCAGAG305570.20144931166925314No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCATGAGCGTCAGTATTGGCCCAGGG278550.18363617424966608No Hit
CCTGTTTGCTCCCCACGCTTTCGCACATGAGCGTCAGTACCTTCCCAAGG263650.17381323762672576No Hit
CCCGTTCGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGTTACCGTCCAGAA258350.1703191729219215No Hit
CCTGTTTGCTACCCACGCTTTCGCGCATGAACGTCAGTGTTATCCCAGGA252870.16670644186865216No Hit
CCTGTTTGCTCCCCATGCTTTCGCATCTCAGTGTCAGTATCAGGCCAGAA250680.1652626679623274No Hit
CCTGTTCGCTCCCCTAGCTTTCGCACTTCAGCGTCAGTTACCGTCCAGTG247340.16306074794080921No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTATTGGTCCAGTT219180.1444960569809435No Hit
CCTGTTCGATACCCACGCTTTCGAGCATCAGCGTCAGTTGCGCTACAGTA217120.14313798654851015No Hit
CCTGTTCGCTCCCCACGCTTTCGTCCATCAGCGTCAATCCATTGTTAGTA215720.14221502606044864No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCCTCAGCGTCAGTAACGACCCAGAG207090.13652563390904093No Hit
CCTGTTTGATACCCACACTTTCGAGCCTCAGCGTCAGTTACAGCCCGGAC202280.13335460537505817No Hit
CCTGTTCGATACCCGCACCTTCGAGCTTAAGCGTCAGTTGCGCTCCCGCC201900.1331040875282986No Hit
CCTGTTCGCTCCCCATGCTTTCGCTTCTCAGCGTCAGTTACAGCCCAGAG201750.13300519890457774No Hit
CCTGTTTGATCCCCACGCTTTCGTGCTTCAGTGTCAGACGGAGCCTGGTA200270.13202949781719844No Hit
CCTGTTCGCTCCCCATGCTTTCGCTCCTCAGCGTCAGTTACTGCCCAGAG199100.13125816655217562No Hit
CCTGTTCGCTCCCCTAGCTTTCGCACTTCAGCGTCAGTTGCCGTCCAGTG186250.12278670778675393No Hit
CCTGTTTGCTACCCACGCTTTCGAGCATGAACGTCAGTATTATCCCAGGG185350.12219337604442869No Hit
CCTGTTTGCTCCCCACGCTTTCACGCATTAGCGTCAGTTAAGTTCCAGCA181680.11977390105072458No Hit
CCTGTTTGCTCCCCACGCTCTCGCTCCTCAGCGTCAGTAACGACCCAGAG175180.11548872735615331No Hit
CCTGTTTGCTCCCCACGCTTTCGCGCTTCAGCGTCAGTATCTGTCCAGTA162420.10707660176496417No Hit
CCTGTTTGATCCCCACGCTTTCGCACATCAGCGTCAGTTGCAGACCAGAA158710.10463075647160117No Hit
CCTGTTTGATACCCACACTTTCGCGCCTCAGCGTCAGTTGCAGCCCGGAC158070.10420883167705877No Hit
CCTGTTTGATACCCACACTTTCGAGCCTCAGCGTCAGTTACACCCCGGAC157780.10401764700453174No Hit
CCTGTTCGCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAAGCCAGAG155860.10275187262090452No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGTTTGC10549800.0244.846733
TTTGCTC8755800.0244.794345
CTGTTCG1524200.0244.590122
GTTTGCT10597300.0244.159624
CTGTTTG11764800.0243.840062
TTGCTCC8844500.0243.801946
TTGATAC881100.0243.762636
TGTTCGA200350.0243.53263
TGTTTGA1183000.0243.467473
CCTGTTC1519050.0243.44361
TGCTCCC8894550.0242.603597
TTTGATC308300.0242.417315
CCTGTTT11733650.0242.162381
CTCCCCA9372150.0241.422589
GCTCCCC9956850.0240.71738
TGTTCGC1347900.0240.68313
TTTGCTA1881250.0240.005585
TGCTACC1904100.0238.733787
TTGCTAC1904500.0238.625756
GTTTGAT1213200.0237.66944
Produced by FastQC (version 0.11.2)