FastQCFastQC Report
Tue 19 Jul 2016
000000000-APTJP_l01n01_w2.35100000065e40.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-APTJP_l01n01_w2.35100000065e40.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1902751
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTATACT8950.016.5921784
CCTATAC7200.014.68753
TATACCG3400.014.5588255
GTATAGG6850.014.4525541
ACAGCGC2651.6370905E-1114.4339638
ACAGTCC2905.456968E-1213.9655188
TTAGACT3250.013.8461544
TTATACT8050.013.6956524
GTATAGA5750.013.6956521
TAGACAG3300.013.6363645
TATACTA11750.013.5957445
CCTGTAC2652.4374458E-1013.5849063
CTAATAC5300.013.5849063
ACTGTCC3500.013.5000018
TATACTG6050.013.3884295
TAGGACC3400.013.2352954
CTAGGAC3500.012.8571433
GTATAAA9850.012.7918791
GTAATAC4600.012.7173923
ATACCGT2857.748895E-1012.6315796
Produced by FastQC (version 0.11.2)