FastQCFastQC Report
Fri 3 Jun 2016
000000000-AP3CC_l01n01_viji6.35100000056f59.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-AP3CC_l01n01_viji6.35100000056f59.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences146673
Sequences flagged as poor quality0
Sequence length251
%GC39

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCCGTCC500.001830220773.58
GGTGCGA954.60893E-664.473697
GTGCGAC902.740111E-454.4444478
TGTAGGC750.009115949.0000049
TGCGACG1159.176691E-442.6086969
ATGTGTC1350.00201827936.29637
ACCAGTG1350.00201827936.29638
ATACCGC1350.00201827936.29636
AGGTGCG1450.002865570833.7931026
ACGGTGT1450.002865570833.7931028
CCAATAC2302.2538929E-531.956523
TATACGG1550.003972727331.6129025
ACTATGC1953.2151706E-431.4102578
ACTGTGG1600.0046404530.6249988
GTATAAA4051.537046E-930.2469141
ATACGGT1650.00539398529.696976
TATACAG3352.985853E-729.253735
GTTATAC2104.9633696E-429.1666663
TAGGTGC1700.00624115328.8235285
TAGCAAG2155.696132E-428.488375
Produced by FastQC (version 0.11.2)