000000000-AKRU9_l01n01_exp163gap1bff_93.3510000004f92d.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	000000000-AKRU9_l01n01_exp163gap1bff_93.3510000004f92d.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2209156
Sequences flagged as poor quality	0
Sequence length	46
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTCCACGAGGTCGACATCTCGTATGCCGTCTTCTGCTTGAAAAAAA	164840	7.461673145762454	Illumina PCR Primer Index 11 (96% over 28bp)
GTCCACGAGGTCTCTTATCCCTAGTGACTGTCGTACGCTGCAGGTC	18240	0.8256546844134139	No Hit
GTCCACGAGGTCTCTGCGACTATCGAACCATATACCGTACGCTGCA	9850	0.4458716360456211	No Hit
GTCCACGAGGTCGACACCTCGTATGCCGTCTTCTGCTTGAAAAAAA	4226	0.19129477501815173	RNA PCR Primer, Index 41 (96% over 28bp)
GTCCACGCTGCAGGTCGACATCTCGTATGCCGTCTTCTGCTTGAAA	3183	0.14408217436885398	RNA PCR Primer, Index 41 (96% over 30bp)
GTCCACGAGGTCTCTCCGCATACGCAATAAGTGGACGTACGCTGCA	2917	0.13204137688782502	No Hit
GTCCACGAGGTCTCTACGTATCCTCAGTCTTGATCGTACGCTGCAG	2399	0.10859350810897916	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTTTGAT	145	40.000004	29
GAAATGA	175	40.000004	24
TTGTGGA	145	40.000004	15
GCGAATT	145	40.000004	23
CTTTTGT	175	40.000004	14
CTTTTCG	145	40.000004	14
CGTTGGC	245	40.000004	30
GCTATCA	145	40.000004	17
TTCACCT	135	40.000004	15
AAGGTTT	215	40.000004	26
TGCGGTG	135	40.000004	29
AGGCGAA	135	40.000004	22
CATTCAA	135	40.000004	22
TGTGCGG	185	40.000004	28
GTGTGTT	145	40.000004	28
AAACGGT	135	40.000004	25
TACGCAA	265	40.000004	21
TCATGAG	270	40.000004	15
GTCGTCG	245	40.000004	31
AGACAAT	290	40.000004	23