000000000-AKRU9_l01n01_exp163gap1bff_80.3510000004f855.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	000000000-AKRU9_l01n01_exp163gap1bff_80.3510000004f855.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1020
Sequences flagged as poor quality	0
Sequence length	46
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGCTAAAGAATGGAACAACTCACTAAAAACCAAGCTGTCGCTACTT	323	31.666666666666664	No Hit
GACGGCCTCATCAGGGTTAGGAACATTAGAGCCTTGAATGGCAGAT	245	24.019607843137255	No Hit
AAATAACCGTCAGGATTGACACCCTCCCAATTGTATGTTTTCATGC	157	15.392156862745098	No Hit
TCCACGAGGTCGACATCTCGTATGCCGTCTTCTGCTTGAAAAAAAA	101	9.901960784313726	RNA PCR Primer, Index 41 (96% over 30bp)
GTCCACGAGGTCGACATCTCGTATGCCGTCTTCTGCTTGAAAAAAA	3	0.29411764705882354	Illumina PCR Primer Index 11 (96% over 28bp)
AGCTACAGAATGGAACAACTCACTAAAAACCAAGCTGTCGCTACTT	3	0.29411764705882354	No Hit
TCCACGAGGTCGACACCTCGTATGCCGTCTTCTGCTTGAAAAAAAA	3	0.29411764705882354	Illumina PCR Primer Index 11 (96% over 26bp)
GACGCCCTCATCAGGGTTAGGAACATTAGAGCCTTGAATGGCAGAT	2	0.19607843137254902	No Hit
GTCCACGAGGTCTCTTCGCGGACCAGATTACTTAGCGTACGCTGCA	2	0.19607843137254902	No Hit
GACGTCCTCATCAGGGTTAGGAACATTAGAGCCTTGAATGGCAGAT	2	0.19607843137254902	No Hit
GTCCACGAGGTCTCTCATGATATGAAGTTTCCGCCGTACGCTGCAG	2	0.19607843137254902	No Hit
GTCCACGAGGTCTCTATCACATAGAGAGACGCTGCCGTACGCTGCA	2	0.19607843137254902	No Hit
ACATAACCGTCAGGATTGACACCCTCCCAATTGTATGTTTTCATGC	2	0.19607843137254902	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATGTT	20	7.456525E-4	40.000004	33
CGTCAGG	20	7.456525E-4	40.000004	8
CCAATTG	20	7.456525E-4	40.000004	27
TTCATGC	20	7.456525E-4	40.000004	40
AACCGTC	20	7.456525E-4	40.000004	5
TGGCAGA	20	7.456525E-4	40.000004	39
TCCCAAT	20	7.456525E-4	40.000004	25
GCCTTGA	20	7.456525E-4	40.000004	31
GGGTTAG	20	7.456525E-4	40.000004	14
GCCTCAT	20	7.456525E-4	40.000004	5
TAGGAAC	20	7.456525E-4	40.000004	18
TTGTATG	20	7.456525E-4	40.000004	31
AGGATTG	20	7.456525E-4	40.000004	12
CTCCCAA	20	7.456525E-4	40.000004	24
ATTAGAG	20	7.456525E-4	40.000004	25
TCAGGGT	20	7.456525E-4	40.000004	11
TATGTTT	20	7.456525E-4	40.000004	34
TCAGGAT	20	7.456525E-4	40.000004	10
TGTTTTC	20	7.456525E-4	40.000004	36
AGGGTTA	20	7.456525E-4	40.000004	13