000000000-AKRU9_l01n01_exp163gap1bff_74.3510000004f7f6.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	000000000-AKRU9_l01n01_exp163gap1bff_74.3510000004f7f6.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	243588
Sequences flagged as poor quality	0
Sequence length	46
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTCCACGAGGTCGACATCTCGTATGCCGTCTTCTGCTTGAAAAAAA	12309	5.05320459135918	Illumina PCR Primer Index 11 (96% over 28bp)
GTCCACGAGGTCTCTGCGACTATCGAACCATATACCGTACGCTGCA	999	0.4101187250603478	No Hit
ATAACAATACTGTAGGCATGGGTGATGCTGGTATTAAATCTGCCAT	431	0.17693810860961953	No Hit
CTTCGGCGTTATAACCTCACACTCAATCTTTTATCACGAAGTCATG	409	0.16790646501469694	No Hit
GTCCACGAGGTCGACACCTCGTATGCCGTCTTCTGCTTGAAAAAAA	337	0.13834835870404125	RNA PCR Primer, Index 41 (96% over 28bp)
CCAGCAATAGCACCAAACATAAATCACCTCACTTAAGTGGCTGGAG	333	0.13670624168678258	No Hit
GTCCACGAGGTCTCTGCGTGACAGTTTGTTCAATTCGTACGCTGCA	298	0.12233771778576942	No Hit
GTCCACGAGGTCTCTCCGCATACGCAATAAGTGGACGTACGCTGCA	278	0.11412713269947616	No Hit
CGCTTCGCTTGGTCAACCCCTCAGCGGCAAAAATTAAAATTTTTAC	275	0.11289554493653217	No Hit
GTCCACGAGGTCTCTAGTACAGACTCACCCAGTAGCGTACGCTGCA	266	0.10920078164770022	No Hit
GTCCACGAGGTCTCTACGTATCCTCAGTCTTGATCGTACGCTGCAG	258	0.10591654761318292	No Hit
GTCCACGAGGTCTCTCCTAGCTGATGACTGTACTTGTACGCTGCAG	247	0.10140072581572163	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAACGC	30	4.8517068E-6	40.000004	25
CTGCTCT	30	4.8517068E-6	40.000004	14
CAGCGGT	30	4.8517068E-6	40.000004	28
GGGTGCG	30	4.8517068E-6	40.000004	31
TTGGCGT	60	0.0	40.000004	32
CCCCTCA	30	4.8517068E-6	40.000004	17
GCAAGAA	30	4.8517068E-6	40.000004	24
AATTTTT	30	4.8517068E-6	40.000004	38
AGTTTAA	30	4.8517068E-6	40.000004	21
CAAGTGA	30	4.8517068E-6	40.000004	16
TTGTGCT	30	4.8517068E-6	40.000004	17
CAAAAAT	30	4.8517068E-6	40.000004	28
ACCATTG	30	4.8517068E-6	40.000004	24
AACCCCT	30	4.8517068E-6	40.000004	15
CCGGCTA	30	4.8517068E-6	40.000004	16
CTTTTAG	30	4.8517068E-6	40.000004	14
ATAATAT	30	4.8517068E-6	40.000004	25
ATGGAAA	30	4.8517068E-6	40.000004	21
TATGGAT	30	4.8517068E-6	40.000004	17
GCAGTTC	30	4.8517068E-6	40.000004	25