000000000-AKRU9_l01n01_exp163gap1bff_64.3510000004f756.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	000000000-AKRU9_l01n01_exp163gap1bff_64.3510000004f756.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	351477
Sequences flagged as poor quality	0
Sequence length	46
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTCCACGAGGTCGACATCTCGTATGCCGTCTTCTGCTTGAAAAAAA	64128	18.245290588004337	Illumina PCR Primer Index 11 (96% over 28bp)
GTCCACGAGGTCTCTTATCCCTAGTGACTGTCGTACGCTGCAGGTC	3786	1.0771686340784745	No Hit
GTCCACGAGGTCGACACCTCGTATGCCGTCTTCTGCTTGAAAAAAA	1803	0.5129780896047251	RNA PCR Primer, Index 41 (96% over 28bp)
GTCCACGCTGCAGGTCGACATCTCGTATGCCGTCTTCTGCTTGAAA	1236	0.35165885676729913	RNA PCR Primer, Index 41 (96% over 30bp)
GTCCACGAGGTCTCTGCGACTATCGAACCATATACCGTACGCTGCA	1199	0.34113185215533304	No Hit
GTCCACGAGGTCGACAACTCGTATGCCGTCTTCTGCTTGAAAAAAA	522	0.14851611912017004	RNA PCR Primer, Index 41 (96% over 28bp)
TAGAAACCAACAGCCATATAACTGGTAGCTTTAAGCGGCTCACCTT	495	0.1408342508898164	No Hit
GTCCACGAGGTCGACATCTCGTATGCCGTCTTCTGCTTGAAAAACA	474	0.13485946448843025	Illumina PCR Primer Index 11 (96% over 28bp)
GTCCACGAGGTCTCTGCGTGACAGTTTGTTCAATTCGTACGCTGCA	402	0.1143744825408206	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGACAA	30	4.8578604E-6	40.000004	22
TCCGGCT	30	4.8578604E-6	40.000004	15
CTTGTAT	30	4.8578604E-6	40.000004	14
CTTAAGA	60	0.0	40.000004	14
CTAGATC	60	0.0	40.000004	14
AACGTGC	30	4.8578604E-6	40.000004	26
CGGAATG	30	4.8578604E-6	40.000004	28
ATGGGAT	30	4.8578604E-6	40.000004	27
CTAGAAC	30	4.8578604E-6	40.000004	18
AACCGCC	60	0.0	40.000004	26
TGATAAA	30	4.8578604E-6	40.000004	27
AATCCGC	30	4.8578604E-6	40.000004	26
CAAACCG	30	4.8578604E-6	40.000004	31
CTCGTGG	30	4.8578604E-6	40.000004	29
TTGTGTA	30	4.8578604E-6	40.000004	33
GGTAAGT	30	4.8578604E-6	40.000004	23
GTACAGG	30	4.8578604E-6	40.000004	23
CTCAAAT	30	4.8578604E-6	40.000004	22
CTCCGGA	60	0.0	40.000004	14
CATGCTG	30	4.8578604E-6	40.000004	26