000000000-AKRU9_l01n01_exp163gap1bff_59.3510000004f705.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	000000000-AKRU9_l01n01_exp163gap1bff_59.3510000004f705.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	384284
Sequences flagged as poor quality	0
Sequence length	46
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTCCACGAGGTCGACATCTCGTATGCCGTCTTCTGCTTGAAAAAAA	48767	12.690354009014165	Illumina PCR Primer Index 11 (96% over 28bp)
GTCCACGCTGCAGGTCGACATCTCGTATGCCGTCTTCTGCTTGAAA	3954	1.0289265230922964	RNA PCR Primer, Index 41 (96% over 30bp)
GTCCACGAGGTCTCTTATCCCTAGTGACTGTCGTACGCTGCAGGTC	3395	0.8834611901614432	No Hit
GTCCACGAGGTCTCTGCGACTATCGAACCATATACCGTACGCTGCA	1491	0.38799429588533485	No Hit
GTCCACGAGGTCGACACCTCGTATGCCGTCTTCTGCTTGAAAAAAA	1240	0.3226780193814991	RNA PCR Primer, Index 41 (96% over 28bp)
GTCCACGAGGTCTCTACGTATCCTCAGTCTTGATCGTACGCTGCAG	494	0.12855075933424237	No Hit
GTCCACGAGGTCTCTGATAGATCCATCACGCTCCGTACGCTGCAGG	480	0.12490762040574159	No Hit
GTCCACGAGGTCTCTAGTCGGATCACCCGCTGAATCGTACGCTGCA	426	0.11085551311009564	No Hit
GTCCACGAGGTCTCTAGTACAGACTCACCCAGTAGCGTACGCTGCA	416	0.10825327101830938	No Hit
GTCCACGAGGTCTCTGCGTGACAGTTTGTTCAATTCGTACGCTGCA	390	0.10148744157966504	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTTATT	30	4.8590464E-6	40.000004	27
ACAACTA	30	4.8590464E-6	40.000004	24
CTTAAGT	30	4.8590464E-6	40.000004	14
ATCCTGT	30	4.8590464E-6	40.000004	28
TTAGGTC	30	4.8590464E-6	40.000004	15
CGGAATG	30	4.8590464E-6	40.000004	28
TAATAGG	60	0.0	40.000004	15
AACAACG	30	4.8590464E-6	40.000004	24
TCGTTTC	30	4.8590464E-6	40.000004	31
TGCCCTA	30	4.8590464E-6	40.000004	15
GCAAGTC	30	4.8590464E-6	40.000004	24
TCGCACT	30	4.8590464E-6	40.000004	23
GATAATA	30	4.8590464E-6	40.000004	19
TCCGCAT	60	0.0	40.000004	15
TTGGAGA	30	4.8590464E-6	40.000004	15
GATCGGA	30	4.8590464E-6	40.000004	19
CTCAACG	30	4.8590464E-6	40.000004	14
GGAGATC	30	4.8590464E-6	40.000004	30
TCATTTG	30	4.8590464E-6	40.000004	26
CTTCCAT	60	0.0	40.000004	14