000000000-AKRU9_l01n01_exp163gap1bff_46.3510000004f63d.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	000000000-AKRU9_l01n01_exp163gap1bff_46.3510000004f63d.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	379250
Sequences flagged as poor quality	0
Sequence length	46
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTCCACGAGGTCGACATCTCGTATGCCGTCTTCTGCTTGAAAAAAA	96094	25.33790375741595	Illumina PCR Primer Index 11 (96% over 28bp)
GTCCACGAGGTCTCTTATCCCTAGTGACTGTCGTACGCTGCAGGTC	3311	0.8730388925510877	No Hit
GTCCACGAGGTCGACACCTCGTATGCCGTCTTCTGCTTGAAAAAAA	2619	0.6905735003295979	RNA PCR Primer, Index 41 (96% over 28bp)
GTCCACGAGGTCTCTGCGACTATCGAACCATATACCGTACGCTGCA	1705	0.4495715227422544	No Hit
GTCCACGCTGCAGGTCGACATCTCGTATGCCGTCTTCTGCTTGAAA	959	0.25286750164798943	RNA PCR Primer, Index 41 (96% over 30bp)
GTCCACGAGGTCGACAACTCGTATGCCGTCTTCTGCTTGAAAAAAA	845	0.2228081740276862	RNA PCR Primer, Index 41 (96% over 28bp)
GTCCACGAGGTCGACATCTCGTATGCCGTCTTCTGCTTGAAAAACA	689	0.18167435728411338	Illumina PCR Primer Index 11 (96% over 28bp)
GTCCACGAGGTCTCTCCGCATACGCAATAAGTGGACGTACGCTGCA	544	0.14344100197758736	No Hit
ACATAGAAACCAACAGCCATATAACTGGTAGCTTTAAGCGGCTCAC	526	0.13869479235332896	No Hit
GTCCACGAGGTCGACATCTCGTATGCCGTCTTCTGCTTGCAAAAAA	499	0.13157547791694132	Illumina PCR Primer Index 11 (96% over 28bp)
GTCCACGAGGTCTCTAGATGCTCATAACGCTGCTCCGTACGCTGCA	430	0.1133816743572841	No Hit
GTCCACGAGGTCTCTAGAGTGTCCCAAGTTCCCTTCGTACGCTGCA	410	0.10810810810810811	No Hit
GTCCACGAGGTCTCTGGTGCTCAGTCATCTTCACTCGTACGCTGCA	394	0.10388925510876731	No Hit
GTCCACGAGGTCTCTCGATCCACAGTAGCTGAATCCGTACGCTGCA	384	0.1012524719841793	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTTATT	30	4.858879E-6	40.000004	27
GTTTGTT	30	4.858879E-6	40.000004	24
CTTGTAT	30	4.858879E-6	40.000004	14
TCGCCGT	60	0.0	40.000004	32
CTTAAGC	30	4.858879E-6	40.000004	14
ACAACGA	30	4.858879E-6	40.000004	24
GTTGAAA	30	4.858879E-6	40.000004	21
GGAATTT	30	4.858879E-6	40.000004	15
GAGGATA	30	4.858879E-6	40.000004	23
GTGCACG	30	4.858879E-6	40.000004	31
CATGGGA	30	4.858879E-6	40.000004	26
AAACTCT	30	4.858879E-6	40.000004	25
GGGTGTG	30	4.858879E-6	40.000004	22
ATGGGAG	30	4.858879E-6	40.000004	27
GAGGAAC	30	4.858879E-6	40.000004	17
CGGAAAT	30	4.858879E-6	40.000004	25
ACAGTTG	30	4.858879E-6	40.000004	25
TGATACT	60	0.0	40.000004	15
AATCCGG	30	4.858879E-6	40.000004	26
GAAGCTT	30	4.858879E-6	40.000004	26