000000000-AHBBJ_l01n02.3320000005057e.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	000000000-AHBBJ_l01n02.3320000005057e.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10428462
Sequences flagged as poor quality	0
Sequence length	12
%GC	48

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GACTCGAATCGT	626826	6.010723345398391	No Hit
TATGCACCAGTG	613185	5.879917863247716	No Hit
AGTTCCCGAGTA	492522	4.72286325634595	No Hit
GACACATTTCTG	491264	4.710800116066971	No Hit
TAACACCACATC	488684	4.686060130439177	No Hit
GTACGTGGGATC	484491	4.645852859223153	No Hit
CGGACTACAACT	481143	4.613748412757317	No Hit
TCAACAGCATCG	411237	3.9434098719446835	No Hit
CGCCAAATAACC	297202	2.8499120963378877	No Hit
ATGATGACCCGT	259155	2.48507402146165	No Hit
GAATGATGAGTG	245269	2.351919199590505	No Hit
ATTAGTTCGCGT	238747	2.289378817317453	No Hit
CCATAGGGTTCA	189005	1.8123957300702636	No Hit
ACGGCATGGCAT	174017	1.6686736740278671	No Hit
AGCCTAAGCACG	170683	1.6367034755460586	No Hit
TTATGCAGTCGT	165084	1.5830138710770583	No Hit
TACTTCGCTCGC	151306	1.4508946765112631	No Hit
CGTCCGAAATAC	139156	1.3343866046594406	No Hit
CTTACACCAAGT	138087	1.3241358121648235	No Hit
AAGATGGATCAG	127834	1.2258183421486313	No Hit
TCTGTTGCTCTC	118556	1.1368502853057336	No Hit
CTAGATTTGCCA	110926	1.0636851340111322	No Hit
GCGGCAATTACG	94116	0.9024916617618207	No Hit
TGGCACCGATTA	59030	0.5660470355072493	No Hit
CTATTTGCGACA	56176	0.5386796250492163	No Hit
GGTGTCTATTGT	53540	0.5134026474853147	No Hit
GTCCGAAACACT	43013	0.41245775263888385	No Hit
GAACTAGTCACC	37863	0.36307367280045705	No Hit
GTGGGATGTTTC	36866	0.35351329850940627	No Hit
ATACCTTCGGTA	32445	0.31111970298208885	No Hit
CCATACATAGCT	30537	0.29282362058758044	No Hit
ACGATGCGACCA	30281	0.29036880030823337	No Hit
ATCGATCTGTGG	24436	0.234320266977048	No Hit
CTCGAGAGTACG	24023	0.23035995144825766	No Hit
GCAGGATAGATA	20899	0.2004034727268508	No Hit
CCATGCGATAAC	20156	0.19327874043171467	No Hit
ATGTCGAGAGAA	19913	0.1909485789946782	No Hit
AAGGAGCGCCTT	19636	0.188292386739291	No Hit
TGAGTCACTGGT	18596	0.17831967935444365	No Hit
CGATCCGTATTA	17878	0.17143467560221248	No Hit
GGTCAGCTTAAC	17581	0.16858670051250127	No Hit
CGAGAAGAGAAC	15721	0.15075089692037044	No Hit
CTACCGGATCAA	15604	0.1496289673395751	No Hit
TAAACCGCGTGT	15400	0.14767278242947043	No Hit
TTGATGCTATGC	14990	0.14374123432582867	No Hit
AGGCTACACGAC	14630	0.1402891433079969	No Hit
ACCACATACATC	14478	0.13883159376713458	No Hit
TAGCGGATCACG	13672	0.13110274554387788	No Hit
TGGCATACGGCA	13499	0.1294438240269754	No Hit
AATGTCCGTGAC	13272	0.12726708885739813	No Hit
CCAAGTCTTACA	11886	0.1139765384387458	No Hit
CAGCTAGAACGC	11430	0.10960388981615889	No Hit
GTACATACCGGT	10465	0.10035036806002649	No Hit

Adapter Content

Can't analyse adapters as read length is too short

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGGTTCC	130	3.6452548E-9	6.0000243	6
TGAGATC	70	4.6965867E-4	6.0000234	6
GAGCGCC	2145	0.0	5.9999957	4
ACGTGGT	395	0.0	5.9999957	3
AGCTGTT	210	0.0	5.9999957	1
ACGTCGG	60	0.0033962924	5.9999957	3
ATCGGCG	445	0.0	5.9999957	1
GCTAACG	1165	0.0	5.9999957	3
GGGCTAC	55	0.009160088	5.999995	2
CGAAACG	70	4.6968757E-4	5.999995	5
CATGATG	130	3.6452548E-9	5.999995	2
CACGCGG	55	0.009160088	5.999995	2
GCTGATG	560	0.0	5.999995	1
AATGCTG	345	0.0	5.999995	2
CCACTCG	80	6.538448E-5	5.999995	5
TACTGGG	90	9.150766E-6	5.999995	2
CGGGCTA	55	0.009160088	5.999995	1
CGCAGTC	65	0.001261851	5.999995	4
AACTGGC	55	0.009160088	5.999995	5
CGGTGAC	190	0.0	5.999995	4

Summary