##FastQC 0.11.2 >>Basic Statistics pass #Measure Value Filename 000000000-AGRBU l01n02.3320000000e591.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 16710914 Sequences flagged as poor quality 0 Sequence length 12 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.67705093808753 33.0 32.0 34.0 16.0 34.0 2 31.01261307430581 33.0 32.0 34.0 16.0 35.0 3 31.317211673760035 33.0 32.0 34.0 18.0 35.0 4 31.068019080225056 33.0 32.0 34.0 16.0 35.0 5 30.980472761693346 33.0 32.0 34.0 16.0 35.0 6 32.73059702180264 35.0 33.0 37.0 18.0 37.0 7 32.7122820451353 34.0 33.0 37.0 18.0 37.0 8 32.67251904952656 35.0 33.0 37.0 18.0 37.0 9 32.43313004902066 34.0 32.0 37.0 16.0 37.0 10 32.60282728999742 34.0 33.0 37.0 18.0 37.0 11 33.11940519830333 35.0 33.0 37.0 18.0 37.0 12 32.89605577528554 36.0 33.0 37.0 18.0 37.0 >>END_MODULE >>Per tile sequence quality fail #Tile Base Mean 1101 1 0.3350528827385162 1101 2 0.3188798857601718 1101 3 0.3026400490769241 1101 4 0.49861260168546906 1101 5 0.5808095338838655 1101 6 0.6899237879946796 1101 7 0.640099894798702 1101 8 0.8888379161623732 1101 9 0.7638403632173407 1101 10 0.7297712406966141 1101 11 0.5993103654821823 1101 12 0.6781808830274016 1102 1 0.46699329682469326 1102 2 0.5710348890404262 1102 3 0.4324363420509947 1102 4 0.5067942174893467 1102 5 0.7543508496020266 1102 6 -0.6245869390101575 1102 7 0.34609145550813736 1102 8 0.5729843289277028 1102 9 0.5602954137196008 1102 10 0.6561605097484602 1102 11 0.6039879182418844 1102 12 0.027658215861237068 1103 1 0.6133851873052052 1103 2 0.5274861218171552 1103 3 0.4924899987535767 1103 4 0.7084715169740115 1103 5 0.7340300843143339 1103 6 0.7194015635982893 1103 7 0.7826405897154913 1103 8 0.9085272003288694 1103 9 0.728334211657959 1103 10 0.69492063347748 1103 11 0.5339069612896381 1103 12 0.6277741524017131 2112 1 0.5335343727162289 2112 2 0.4889561037265082 2112 3 0.48262544042583144 2112 4 0.6734067899614367 2112 5 0.6886100619250541 2112 6 0.559687099511919 2112 7 0.7102665577233012 2112 8 0.9272138389510332 2112 9 0.7208846914959679 2112 10 0.7214045664585171 2112 11 0.4399717829314582 2112 12 0.6810819616967194 1113 1 -6.771082222542397 1113 2 -4.451509117387808 1113 3 -2.499990132632629 1113 4 -7.342973030608388 1113 5 -8.885966812495791 1113 6 -2.742397556592163 1113 7 -9.055680554434456 1113 8 -8.784529911859405 1113 9 -10.503126529051961 1113 10 -10.04602644855267 1113 11 -6.903035770541415 1113 12 -9.488123495513694 2113 1 0.46589106035654737 2113 2 0.4681316527461341 2113 3 0.3783494664359921 2113 4 0.5664123353825943 2113 5 0.6259793813083299 2113 6 0.002806652694573586 2113 7 0.5110820648023733 2113 8 0.5736281338144593 2113 9 0.62739262752212 2113 10 0.6016557781176957 2113 11 0.5789596719043217 2113 12 0.40584260610278733 1112 1 0.7082914202646009 1112 2 0.5333584576520352 1112 3 0.3347857618142669 1112 4 0.4972911321257527 1112 5 0.6146446316782956 1112 6 0.4920980791960403 1112 7 0.37802052085240234 1112 8 0.7152339287580531 1112 9 0.6647758202233263 1112 10 0.5569864863766725 1112 11 0.5031449343942995 1112 12 0.6537159010028475 2114 1 0.5667061211339579 2114 2 0.47917721420527926 2114 3 0.27103073586794935 2114 4 0.48124314149939096 2114 5 0.5323153632682001 2114 6 -0.021922441945278592 2114 7 0.3386278626397754 2114 8 0.6534706436185047 2114 9 0.6217422595709721 2114 10 0.6120976102640014 2114 11 0.381357977000647 2114 12 0.6922362292039423 1114 1 0.7322632006959005 1114 2 0.47084007984800635 1114 3 0.31165201029591216 1114 4 0.5743060738992831 1114 5 0.5991900524862146 1114 6 -0.28459173457266473 1114 7 0.32104946932714995 1114 8 0.7261642127111969 1114 9 0.5386836819607126 1114 10 0.3764089855266448 1114 11 0.4025603699312512 1114 12 0.5524995976122398 1109 1 0.6023343656649054 1109 2 0.39396233004098846 1109 3 0.2932666698778128 1109 4 0.4502494761829112 1109 5 0.5058271712005826 1109 6 -0.6003779509548224 1109 7 0.1757886993893294 1109 8 0.6064958783416472 1109 9 0.5964228120099122 1109 10 0.6144150133959343 1109 11 0.3638899792851191 1109 12 0.6116934364523559 1108 1 0.43909460693131663 1108 2 0.25571033780708774 1108 3 0.199939361345443 1108 4 0.2955516072880826 1108 5 0.47191454201872673 1108 6 0.38926224151053646 1108 7 0.4563007982403704 1108 8 0.5043692667844439 1108 9 0.45459731567377304 1108 10 0.4241033265504939 1108 11 0.33566643610321734 1108 12 0.46724316816096234 1111 1 0.4730648423804453 1111 2 0.0841522971477815 1111 3 0.132674726332624 1111 4 0.1696937162635983 1111 5 0.319581821418236 1111 6 0.1851602375833039 1111 7 0.3276725003612597 1111 8 0.5918984891014603 1111 9 0.4359735608051736 1111 10 0.35567024233956346 1111 11 0.3464791887625509 1111 12 0.20029571906921007 1110 1 0.5538745991095269 1110 2 0.24041506036449078 1110 3 0.09465766924586205 1110 4 0.35708687842939213 1110 5 0.3349808992965606 1110 6 0.292854996768213 1110 7 0.3536725894377355 1110 8 0.6182258530959572 1110 9 0.5620623532279652 1110 10 0.4004273654001764 1110 11 0.2921866953235934 1110 12 0.4777202482256442 1105 1 0.4599436206465093 1105 2 0.28575780307576437 1105 3 0.14388880651298663 1105 4 0.04434384736447683 1105 5 0.3181425757097358 1105 6 0.6147285377336544 1105 7 0.42336127473434004 1105 8 0.5022910817630688 1105 9 0.4829087859526524 1105 10 0.2031329348273303 1105 11 0.16495154864789185 1105 12 0.16135476139709937 1104 1 -0.8204784077532814 1104 2 -0.5125920431768058 1104 3 -0.3008575098689583 1104 4 0.10501328201119264 1104 5 0.1197130128838495 1104 6 0.5504108293489551 1104 7 0.49282755349688045 1104 8 -4.49131590287336 1104 9 -0.7052581204562856 1104 10 -0.15966248220539825 1104 11 0.20472144645263768 1104 12 0.40754103109231465 1107 1 0.036516472283867785 1107 2 0.13847034773709055 1107 3 0.010829060019030834 1107 4 0.3610109541054918 1107 5 0.3479804179433721 1107 6 0.4005144966668581 1107 7 0.4725351033879974 1107 8 0.5806104116578581 1107 9 0.28438169078760467 1107 10 0.4365281252321296 1107 11 0.33946438544042934 1107 12 0.32497480686275537 1106 1 0.2123722215586703 1106 2 0.1044709537292583 1106 3 0.15768522100984583 1106 4 0.17479983260038878 1106 5 0.2617198451146834 1106 6 0.3650378849487126 1106 7 0.4520281040901821 1106 8 0.5658830336671343 1106 9 0.4594950178313866 1106 10 0.49295050931181095 1106 11 0.303052236247936 1106 12 0.44971567601153595 2103 1 0.26325229521484417 2103 2 0.24322396396231127 2103 3 0.1287356563474198 2103 4 0.16969264291639163 2103 5 0.23114627929593468 2103 6 0.21520822241060955 2103 7 0.4433520730307521 2103 8 0.2673126487334443 2103 9 0.34113080176960153 2103 10 0.48307358911947773 2103 11 0.22032619745817783 2103 12 0.7121745186306185 2102 1 -0.6499670872421319 2102 2 -0.46448664363811787 2102 3 -0.43606776344945786 2102 4 -0.21311256828508718 2102 5 -0.2857980755560483 2102 6 -0.40628731252801487 2102 7 0.1357815772959654 2102 8 0.05004132782777759 2102 9 -0.05061200302346691 2102 10 -0.22543577674809256 2102 11 -0.3140332036627669 2102 12 -0.3005041629304799 2101 1 0.28969495325697636 2101 2 0.2833909294874033 2101 3 0.21611252181491025 2101 4 0.43222439942922364 2101 5 0.5394043615234239 2101 6 0.1499080938896853 2101 7 0.45110203862437004 2101 8 0.6108729760303362 2101 9 0.5010512606025941 2101 10 0.5600726823942068 2101 11 0.3512435216230472 2101 12 0.5260098970068015 2107 1 0.18260163200189794 2107 2 -0.006027721587795298 2107 3 -0.1642603536904943 2107 4 0.12623258820518757 2107 5 0.14991639059786266 2107 6 0.27644319762010383 2107 7 0.15933526493938643 2107 8 0.25596002811494856 2107 9 0.38837453523565557 2107 10 0.3483225005656436 2107 11 0.20784139924963085 2107 12 0.27321048492297706 2106 1 0.007213872811956179 2106 2 0.011449096975852058 2106 3 0.0645486192013287 2106 4 0.17205082958105677 2106 5 -0.0498768981566009 2106 6 0.15049605553648604 2106 7 0.3575424102887155 2106 8 0.42829448615879784 2106 9 0.38340120459235294 2106 10 0.22427278319180743 2106 11 0.1908808008766556 2106 12 0.18541929575633276 2105 1 0.22421683571883477 2105 2 0.06210565861127293 2105 3 -0.1200081056077984 2105 4 0.17822082171659304 2105 5 0.2126909889539732 2105 6 0.04101471496154119 2105 7 -0.5413397956526182 2105 8 0.21429983245202067 2105 9 0.1773425658308554 2105 10 0.31520322718858296 2105 11 -0.07556582139108059 2105 12 0.2619721946883615 2104 1 -0.026745859385584936 2104 2 -0.2121306406525747 2104 3 -0.1911554226868688 2104 4 0.11175427099678004 2104 5 0.056883334077845404 2104 6 -2.8895191297618155 2104 7 -0.2127467497244666 2104 8 0.15940719002532688 2104 9 0.008436246371473999 2104 10 -0.0026027338459400085 2104 11 0.06692553462678319 2104 12 0.28772738174472323 2111 1 0.03086065772581037 2111 2 0.07222482022581644 2111 3 -0.08633588274959081 2111 4 -0.12943193195030034 2111 5 0.1749086502504369 2111 6 0.26548553386543006 2111 7 0.2695367191624385 2111 8 0.35638011493720967 2111 9 0.25738722898088895 2111 10 0.27266788646350903 2111 11 -0.08831455825286838 2111 12 0.20875790379740522 2110 1 0.1274871364712169 2110 2 -0.12965440733484002 2110 3 -0.03161428415279843 2110 4 0.013592765448098731 2110 5 0.12564981103613704 2110 6 0.4605564012964649 2110 7 0.32086826411805447 2110 8 0.5404518144661807 2110 9 0.3288914306973041 2110 10 0.06985082773445583 2110 11 0.1340432185970215 2110 12 0.2879048970654736 2109 1 0.06047786215103912 2109 2 0.060502283788007816 2109 3 -0.24309404798842849 2109 4 0.017581218978200752 2109 5 0.057880068396702455 2109 6 0.3443497685235073 2109 7 0.22816074811522924 2109 8 0.18150425721168517 2109 9 0.1492730162560889 2109 10 0.16769876368521608 2109 11 -0.1642372956582605 2109 12 -0.35716043664341157 2108 1 -0.116849939040371 2108 2 -0.31729971397078316 2108 3 -0.37496461360159117 2108 4 -1.1940969063672924E-4 2108 5 -0.136628341975765 2108 6 0.40433466970542753 2108 7 0.26202296573102046 2108 8 0.27548692109133555 2108 9 0.221917756538609 2108 10 0.11593185328554512 2108 11 -0.019685920363819776 2108 12 -0.0169168727058846 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 41.0 15 2222.0 16 58406.0 17 127695.0 18 197917.0 19 270154.0 20 274575.0 21 315791.0 22 335202.0 23 332391.0 24 315558.0 25 310407.0 26 294898.0 27 287313.0 28 295377.0 29 316702.0 30 369454.0 31 490362.0 32 814397.0 33 2049320.0 34 4386601.0 35 4227940.0 36 638191.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 28.21037197606307 18.153315850946274 26.182188478739103 27.454123694251553 2 21.858122182903937 23.143425907164623 22.097265296201034 32.9011866137304 3 21.287243773739725 39.47548290895399 12.835234506024026 26.402038811282257 4 33.28850833652785 11.211738627821315 29.106834012789484 26.392919022861346 5 29.78936998897846 20.399518542193444 25.33444310706165 24.47666836176645 6 33.91757626183703 4.707600075016842 21.09803210045842 40.27679156268771 7 14.672315350315369 34.535980497535924 41.724216880058144 9.067487272090563 8 22.772823796472174 23.039350211484543 15.651747115687389 38.536078876355894 9 26.17535618789949 18.769770388966776 29.70361942522231 25.351253997911428 10 29.71505927204221 26.137217868513957 37.928308409701586 6.2194144497422466 11 13.919938789703542 19.263081600443876 39.43938673851113 27.37759287134145 12 22.63474772443612 16.626410537832374 33.927051143166146 26.81179059456536 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1170.0 1 1170.0 2 1170.0 3 1170.0 4 3373.0 5 5576.0 6 5576.0 7 5576.0 8 5576.0 9 5576.0 10 5576.0 11 5576.0 12 5576.0 13 13554.0 14 21532.0 15 21532.0 16 21532.0 17 21532.0 18 21532.0 19 21532.0 20 21532.0 21 44293.5 22 67055.0 23 67055.0 24 67055.0 25 67055.0 26 67055.0 27 67055.0 28 67055.0 29 159526.5 30 251998.0 31 251998.0 32 251998.0 33 251998.0 34 251998.0 35 251998.0 36 251998.0 37 251998.0 38 2293602.5 39 4335207.0 40 4335207.0 41 4335207.0 42 4335207.0 43 4335207.0 44 4335207.0 45 4335207.0 46 5008618.0 47 5682029.0 48 5682029.0 49 5682029.0 50 5682029.0 51 5682029.0 52 5682029.0 53 5682029.0 54 5852244.0 55 6022459.0 56 6022459.0 57 6022459.0 58 6022459.0 59 6022459.0 60 6022459.0 61 6022459.0 62 6022459.0 63 3142372.0 64 262285.0 65 262285.0 66 262285.0 67 262285.0 68 262285.0 69 262285.0 70 262285.0 71 155183.0 72 48081.0 73 48081.0 74 48081.0 75 48081.0 76 48081.0 77 48081.0 78 48081.0 79 28867.5 80 9654.0 81 9654.0 82 9654.0 83 9654.0 84 9654.0 85 9654.0 86 9654.0 87 9654.0 88 6175.5 89 2697.0 90 2697.0 91 2697.0 92 2697.0 93 2697.0 94 2697.0 95 2697.0 96 1934.0 97 1171.0 98 1171.0 99 1171.0 100 1171.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 5.984113137079157E-6 10 0.0 11 0.0 12 5.984113137079157E-6 >>END_MODULE >>Sequence Length Distribution pass #Length Count 12 1.6710914E7 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 2.2742596786930824 #Duplication Level Percentage of deduplicated Percentage of total 1 72.26307306674718 1.6434499333415522 2 10.122399430551281 0.4604192975305719 3 4.2575541138009925 0.2904835095261437 4 2.60527554699068 0.23700292513623875 5 1.6109196796528182 0.1831824836523791 6 1.167570658324694 0.1593215322151794 7 1.022389086589928 0.1627624792897127 8 0.7514305907327828 0.13671586350720738 9 0.5977226277768017 0.12234388242557287 >10 4.415738303670809 2.0295547758810666 >50 0.5696264308881823 0.9038430215858078 >100 0.43947488938325363 2.0514754097152776 >500 0.08668358553366011 1.4173194004894574 >1k 0.08269858606500315 3.409121291128419 >5k 0.0013291791592658748 0.1991606492328676 >10k+ 0.006114224132623015 86.59384354534254 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CCTCGTTCGACT 990059 5.924625068383453 No Hit TTACTGTGCGAT 840954 5.032363879079265 No Hit TCCGACACAATT 835089 4.997267055530296 No Hit ATGTGCACGACT 822559 4.9222861179226935 No Hit TACACGATCTAC 817919 4.894519832966647 No Hit GCACACACGTTA 786844 4.708563517231912 No Hit CTAACCTCCGCT 779557 4.664957284802016 No Hit CCAGTGTATGCA 773555 4.629040637753267 No Hit GCTGATGAGCTG 754692 4.516162311648543 No Hit GTATGCGCTGTA 689806 4.127877146636025 No Hit GGATGGTGTTGC 685805 4.10393470997457 No Hit AGCTGTTGTTTG 685625 4.102857569609897 No Hit CACGCCATAATG 684404 4.095550967469523 No Hit CAGGCGTATTGG 645460 3.8625056654591123 No Hit GACTTGGTATTC 638475 3.820706635196615 No Hit TGAGTCACTGGT 625095 3.740639201422496 No Hit AGGCTACACGAC 590260 3.532182620292343 No Hit TAGGATTGCTCG 569904 3.4103700132739596 No Hit GGATCGCAGATC 537114 3.2141509435091344 No Hit ACGCGCAGATAC 534374 3.1977544735135375 No Hit >>END_MODULE >>Adapter Content warn >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CACTGGC 1250 0.0 6.0000005 6 GACGGTG 245 0.0 6.0000005 2 CCAGTCT 425 0.0 6.0000005 1 CCCTGCG 55 0.009160799 6.0 4 TCCGGCA 75 1.7513952E-4 6.0 1 CTTAATG 240 0.0 6.0 6 GTCATTA 60 0.0033966054 6.0 4 ATCCTGC 55 0.009160799 6.0 3 GCCCCAA 65 0.0012619871 6.0 4 GTCATAG 60 0.0033966054 6.0 4 GTCATAA 200 0.0 6.0 4 TATCAAG 65 0.0012619871 6.0 3 AACGTCC 195 0.0 6.0 3 GGGTGGT 80 6.5395114E-5 6.0 1 GGGTGAT 75 1.7513952E-4 6.0 3 TGATAAG 165 3.6379788E-12 6.0 3 GTCGCGA 90 9.152645E-6 6.0 5 TTGGCAT 865 0.0 6.0 4 TCCATAA 545 0.0 6.0 4 TCGCAGG 210 0.0 6.0 4 >>END_MODULE