FastQCFastQC Report
Thu 9 Jul 2015
000000000-AG3CH l01n02 82rr.3420000000e1d7.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-AG3CH l01n02 82rr.3420000000e1d7.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1002534
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG5354.506128E-714.906543145
CCGTATC8100.014.320988145
CTCGGTG24400.013.370901145
TCTCGGT23900.013.043933145
CGCCGTA10650.012.253522145
AGATCTC31100.012.122187145
GCCGTAT9100.011.95055145
GTAGATC47200.011.520127145
TGGTCGC15650.011.118212145
TGTAGAT47500.010.989474145
TCGCCGT13900.010.953237145
AGTGTAG48700.010.867557145
AAGAGTG62750.010.860558145
GGTGGTC24100.010.829876145
CGTATCA8050.010.807454145
GAGTGTA53150.010.639699145
GTCGCCG13200.010.435606145
ATCTCGG27200.010.395221145
AGAGTGT55550.010.180018145
TAGATCT30950.010.119548140-144
Produced by FastQC (version 0.11.2)