FastQCFastQC Report
Thu 9 Jul 2015
000000000-AG3CH l01n02 82r.3420000000e1ca.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-AG3CH l01n02 82r.3420000000e1ca.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences802838
Sequences flagged as poor quality0
Sequence length151
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGG1153.1615488E-431.521736145
CGTATCA6150.027.11382145
GCCGTAT8150.024.907976145
CCGTATC7200.023.159723145
CGCCGTA8950.020.251396145
GGTCGCC14050.018.576511145
GTCGCCG11950.017.594143145
TCGCCGT10250.016.97561145
GTGGTCG18200.015.535715145
CGGTGGT24100.015.342323145
TGGTCGC16250.015.169231145
GGTGGTC24600.014.735772145
TCGGTGG25950.014.527938145
TCTCGGT31450.014.292527145
ATCTCGG39800.012.751257145
CTCGGTG29100.012.706186145
TAGATCT49000.012.280613145
GTAGATC65500.011.179389145
AGTGTAG67500.010.955556145
GAGTGTA72600.010.485538145
Produced by FastQC (version 0.11.2)