FastQCFastQC Report
Thu 9 Jul 2015
000000000-AG3CH l01n02 81rrr.3420000000e1a1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-AG3CH l01n02 81rrr.3420000000e1a1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1078280
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGTATC18400.018.913044145
GCGTCGG3002.417092E-416.916666145
GTCGCCG27950.016.601074145
CGCCGTA22000.015.488637145
GGTCGCC32550.014.923196145
GCCGTAT20300.013.928572145
TGGTCGC35750.013.79021145
TCGCCGT25300.013.468379145
ATCTCGG72900.012.431413145
GGTGGTC48450.012.42002145
CTCGGTG56450.012.072631145
GTGGTCG39850.012.007527145
GTGTAGA117300.011.8052145
TCTCGGT60900.011.785715145
AGAGCGG5551.5563384E-411.756756145
CGTATCA16150.011.671826145
GATCTCG76850.011.603773145
CGGTGGT49200.011.493902145
AGTGTAG123250.010.941176145
TCGGTGG52300.010.81262145
Produced by FastQC (version 0.11.2)