FastQCFastQC Report
Thu 9 Jul 2015
000000000-AG3CH l01n02 81.3420000000e17a.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-AG3CH l01n02 81.3420000000e17a.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1013272
Sequences flagged as poor quality0
Sequence length151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGGTCGC6656.847813E-510.902255145
AGTGTAG14350.010.10453145
CGTGTAG32850.09.931507145
TCGTGTA33700.09.681009145
GTCGTGT35450.09.61213145
GTGTAGA16902.0008883E-119.43787145
AGCGTCG42400.09.404482145
TAGGGAA28600.08.872377145
GAGTGTA17750.08.577465145
CGTCGTG39250.08.496816145
GAGCGTC47150.08.457051145
GCGTCGT42500.08.358823145
AAGAGCG57400.08.20993145
CGGTGGT11502.7340493E-58.195652145
GATCGGA71600.08.100558145
GATCTCG8500.08.017647140-144
GTGTAGG31750.07.9921255145
TCTCGGT7350.07.891156145
GAAGAGC70650.07.7990093145
TCGGTGG9350.07.7540107145
Produced by FastQC (version 0.11.2)