FastQCFastQC Report
Thu 9 Jul 2015
000000000-AG3CH l01n01 82rr.3410000000e1da.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-AG3CH l01n01 82rr.3410000000e1da.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1002534
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACGGCC3150.006498309313.809524145
ATCTCGT18150.013.581267145
CACGGCT36550.013.091655145
TCACGGC39600.012.632576145
TACATCT26400.012.357954145
GTCACGG42750.012.0409355145
CTCGTAT16200.011.635802145
CGGCTAC33450.011.487295145
ATGCCGT10850.011.359447145
CAGTCAC53150.011.321732145
AGTCACG48350.011.096174145
TCCAGTC59750.011.041841145
CTACATC29250.010.905982145
ACCTGTC4700.00713077610.7978728
TGCCGTC10450.010.406698145
GCCGTCT9100.010.357143145
CATCTCG21850.010.28604145
CCAGTCA55400.010.2075815145
ACTCCAG72850.010.150995145
TATGCCG13650.010.091575145
Produced by FastQC (version 0.11.2)