FastQCFastQC Report
Thu 9 Jul 2015
000000000-AG3CH l01n01 81rrr.3410000000e1a4.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename000000000-AG3CH l01n01 81rrr.3410000000e1a4.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1078280
Sequences flagged as poor quality0
Sequence length151
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCCGTC20200.017.227722145
CGTATGC31200.014.639423145
TCGTATG34350.014.563319145
ATCTCGT42850.014.550757145
ATGCCGT21450.014.195805145
TATGCCG23900.013.953975145
CTCGTAT34600.013.619943145
CGTCTTC18550.013.288409145
TCTCGTA38300.012.682768145
GTCACAC117100.012.134928145
CTTGAAT79900.011.705256145
AATCTCG47850.011.515151145
GTATGCC30350.011.466228145
TGAATCT65000.011.376924145
TCACACT111250.011.14382145
GCCGTCT17400.010.833333140-144
AGTCACA130650.010.487946145
ACTTGAA87800.010.3217535145
TTGAATC67700.010.17356145
CACTTGA96200.010.098753145
Produced by FastQC (version 0.11.2)